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Differences between revisions 1 and 40 (spanning 39 versions)
⇤ ← Revision 1 as of 2015-10-26 20:03:19 →
Size: 1273
Editor: ?ThomasVincent
Comment:
← Revision 40 as of 2016-10-17 23:25:50 → ⇥
Size: 0
Editor: FrancoisTadel
Comment: Old version
Deletions are marked like this. Additions are marked like this.
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Tuts #1-5 should have been done by the user

Presentation of the experiment: * finger tapping + description

 * Aude's data: 2 runs of XXX minutes each
 * MRI anatomy 3T
 * link to dataset

'''Import anatomy + MRI'''

import Brainvisa head mesh and MRI file + provide datasets

mark fudicials

'''Import NIRS functional data'''

NIRS Acquisition + description

dataset files:

* 2 nirs files with proper SrcPos and DetPos fields

-> generate these from brainsight output merged with montage coords

-> check if there is a way to directly have this from brainsight without having to forge it

 * 1 file of digitized coords of fiducials (NAS, LE, RE) as a txt file. Coords should be in the same referential as SrcPos and DetPos

'''NIRS-MRI coregistration'''

Use automatic registration

Keep only step 1

Display Optodes (adapted from “Display Sensors”)

- no helmet here -> should be able to show optode positions over head meshSKip manual registration

Edit the channel file

Introduce new nomenclature

S1D1WL1 NIRS_WL1 …S1D1WL2 NIRS_WL2 …

'''Visualize signals '''

Depends on tut #5

Introduce default channel groups: ALL, WL1, WL2

Just adapt sections “Montage selection” and “Channel selection”
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