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| * '''Nov-Dec''': Connectivity tutorial <<BR>><<BR>> |
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| == Tutorial 13: Artifact cleaning with SSP == [CODE] [ONLINE DOC] * Francois: Check the length needed to filter the recordings (after finishing tutorial #10) <<BR>>Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/ArtifactsSsp#SSP_Algorithm_.5BTODO.5D|SSP Algorithm]] == Tutorial 15: Import epochs == [ONLINE DOC] * Richard, Sylvain, John, Francois: Define recommendations for epoch lengths (after finishing #10) <<BR>>Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/Epoching#Epoch_length_.5BTODO.5D|Epoch length]] == Tutorial 20: Head modelling == [ONLINE DOC] * John, Richard, Sylvain: In-depth review of this sensitive tutorial * John, Richard, Sylvain: Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/AllIntroduction#Tutorials.2FHeadModel.References_.5BTODO.5D|References]] == Tutorial 22: Source estimation == [CODE] * John: Dipole scanning: Wrong orientations * John: Inverse code: sLORETA * John: Inverse code: NAI * John: Inverse code: Mixed head models * John, Richard, Sylvain: How to normalize unconstrained sources ? * Francois: Remove the warning messages in the interface * Francois: Call FieldTrip headmodels and beamformers [ONLINE DOC] |
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<<BR>><<BR>><<BR>><<BR>> == Phantom tutorial (for validation) == * John: Prepare Elekta recordings to distribute on the [[http://neuroimage.usc.edu/brainstorm/Tutorials/Phantom|tutorial page]] * Francois: Prepare the Elekta phantom anatomy * Francois: Prepare the analysis script * Francois: Edit the tutorial page == Other analysis scenarios == * Francois: Update all the tutorials (100 pages) * Francois: Add number of pages in the tutorials == Connectivity == * Not documented at all * Richard, Sylvain: Define example dataset and precise results to obtain from them * Richard: How to assess significance from connectivity matrices * Francois: Preparation of a tutorial |
Introduction tutorials: Editing process
http://neuroimage.usc.edu/brainstorm/Tutorials
Redactors:
Francois Tadel: Montreal Neurological Institute
Elizabeth Bock: Montreal Neurological Institute
Reviewers [current reviewing status]
Sylvain Baillet: Montreal Neurological Institute [not started]
Richard Leahy: University of Southern California [validated 1-9]
John Mosher: Cleveland Clinic [not started]
Dimitrios Pantazis: Massachusetts Institute of Technology [validated 1-15]
Expected timeline (2016)
March: Tutorials #1-#21 (interface and pre-processing)
April: Tutorials #22-#24 (source estimation and time-frequency)
May-June: Tutorials #25-#28 (statistics and workflows)
July-Sept: Cross-validation of the pipeline and the results with MNE, FieldTrip and SPM
October: Presentation during a satellite meeting at the Biomag 2016 conference
Nov-Dec: Connectivity tutorial
Tutorial 10: Power spectrum and frequency filters
[CODE]
- Richard, John, Sylvain: Finish the evaluation of the band-pass filters used in Brainstorm
- Francois: Mark with an extended event the time segments that we cannot trust
- Francois: Add warning if recordings are not long enough
- Francois: Check that the bandpass filter is always used with enough data (Hilbert transform, SSP)
[ONLINE DOC]
Richard, John, Sylvain: Section What filters to apply?
Richard, John, Sylvain: Section Filters specifications
Tutorial 13: Artifact cleaning with SSP
[CODE] [ONLINE DOC]
Francois: Check the length needed to filter the recordings (after finishing tutorial #10)
Section SSP Algorithm
Tutorial 15: Import epochs
[ONLINE DOC]
Richard, Sylvain, John, Francois: Define recommendations for epoch lengths (after finishing #10)
Section Epoch length
Tutorial 20: Head modelling
[ONLINE DOC]
- John, Richard, Sylvain: In-depth review of this sensitive tutorial
John, Richard, Sylvain: Section References
Tutorial 22: Source estimation
[CODE]
- John: Dipole scanning: Wrong orientations
- John: Inverse code: sLORETA
- John: Inverse code: NAI
- John: Inverse code: Mixed head models
- John, Richard, Sylvain: How to normalize unconstrained sources ?
- Francois: Remove the warning messages in the interface
Francois: Call FieldTrip headmodels and beamformers
[ONLINE DOC]
Final steps
- Check that the script tutorial_introduction.m produces the same output as the screen captures
- Check all the links in all the pages
- Check the number of pages for each tutorial
Reference on ResearchGate, Academia and Google Scholar:
http://neuroimage.usc.edu/brainstorm/Tutorials/AllIntroduction
Phantom tutorial (for validation)
John: Prepare Elekta recordings to distribute on the tutorial page
- Francois: Prepare the Elekta phantom anatomy
- Francois: Prepare the analysis script
- Francois: Edit the tutorial page
Other analysis scenarios
- Francois: Update all the tutorials (100 pages)
- Francois: Add number of pages in the tutorials
Connectivity
- Not documented at all
- Richard, Sylvain: Define example dataset and precise results to obtain from them
- Richard: How to assess significance from connectivity matrices
- Francois: Preparation of a tutorial