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| * '''Sylvain Baillet''': Montreal Neurological Institute ''[not started]'' * '''Richard Leahy''': University of Southern California ''[validated 1-9]'' |
* '''Sylvain Baillet''': Montreal Neurological Institute ''[overview 1-14, no proofreading]'' * '''Richard Leahy''': University of Southern California ''[validated 1-19]'' |
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| * '''Nov-Dec''': Connectivity tutorial <<BR>><<BR>> |
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| * Francois: Mark with an extended event the time segments that we cannot trust | * Francois: Mark with an extended event the time segments that we cannot trust (edge effect) |
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| * Francois: Check that the bandpass filter is always used with enough data (Hilbert transform, SSP) | |
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| == Tutorial 12: Artifact detection == [ONLINE DOC] * Beth: Adding examples of the different detection processes. Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/ArtifactsDetect#Other_detection_processes|Other detection processes]] == Tutorial 13: Artifact cleaning with SSP == [CODE] * Francois: Check the length needed to filter the recordings (after finishing #10) <<BR>>Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/ArtifactsSsp#SSP_Algorithm_.5BTODO.5D|SSP Algorithm]] == Tutorial 15: Import epochs == [ONLINE DOC] * Richard, Sylvain, John, Francois: Define recommendations for epoch lengths (after finishing #10) <<BR>>Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/Epoching#Epoch_length_.5BTODO.5D|Epoch length]] == Tutorial 20: Head modelling == [ONLINE DOC] * John, Richard, Sylvain: In-depth review of this sensitive tutorial * John, Richard, Sylvain: Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/HeadModel#Additional_documentation_.5BTODO.5D|References]] == Tutorial 22: Source estimation == [CODE] * John: Noise covariance: Cannot regularize GRAD and MAG at the same time ? * John: Inverse code: NAI * John: Inverse code: Mixed head models * Francois: Make the "no regularization" option the default? (changes a lot the range of values) * Francois: Remove the warning messages in the interface * Francois: Call FieldTrip headmodels and beamformers * Francois: Add note in Elekta tutorial: Process MAG and GRAD separately [ONLINE DOC] * John, Richard, Sylvain: Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/SourceEstimation#Source_estimation_options_.5BTODO.5D|Source estimation options]] * John, Richard, Sylvain: Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/SourceEstimation#Advanced_options_.5BTODO.5D|Advanced options]] * John, Richard, Sylvain: Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/SourceEstimation#Equations_.5BTODO.5D|Equations]] * John, Richard, Sylvain: Section [[http://neuroimage.usc.edu/brainstorm/Tutorials/SourceEstimation#References_.5BTODO.5D|References]] * John, Richard, Sylvain: Why are dSPM values 2x lower than Z-score ? * John, Richard, Sylvain: In-depth review of this sensitive tutorial == Tutorial 24: Time-frequency == [CODE] * Francois: Enable option "Hide edge effects" for Hilbert (after finishing #10) [ONLINE DOC] * Francois: Hilbert: Link back to the filters tutorial (after finishing #10) == Tutorial 28: Scripting == * Not evaluated yet |
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| * Check that the script tutorial_introduction.m produces the same output as the screen captures * Check all the links in all the pages * Check the number of pages for each tutorial * Reference on ResearchGate, Academia and Google Scholar: <<BR>>http://neuroimage.usc.edu/brainstorm/Tutorials/AllIntroduction |
* Francois: Check that the script tutorial_introduction.m produces the same output as tutorials * Francois: Check all the links in all the pages * Francois: Reference on ResearchGate, Academia and Google Scholar <<BR>>http://neuroimage.usc.edu/brainstorm/Tutorials/AllIntroduction == Connectivity == * Not documented at all * Richard, Sylvain: Define example dataset and precise results to obtain from them * Richard: How to deal with unconstrained sources?<<BR>> http://neuroimage.usc.edu/forums/showthread.php?2401 * Richard: How to assess significance from connectivity matrices? * Francois: Preparation of a tutorial == Other analysis scenarios == * Beth: Update or delete: http://neuroimage.usc.edu/brainstorm/Tutorials/WorkflowGuide * Francois: Update all the tutorials (100+ pages) * Francois: Remove useless images from all tutorials * Francois: Add number of pages for all the tutorials * Francois: Split list in columns |
Introduction tutorials: Editing process
http://neuroimage.usc.edu/brainstorm/Tutorials
Redactors:
Francois Tadel: Montreal Neurological Institute
Elizabeth Bock: Montreal Neurological Institute
Reviewers [current reviewing status]
Sylvain Baillet: Montreal Neurological Institute [overview 1-14, no proofreading]
Richard Leahy: University of Southern California [validated 1-19]
John Mosher: Cleveland Clinic [not started]
Dimitrios Pantazis: Massachusetts Institute of Technology [validated 1-15]
Expected timeline (2016)
March: Tutorials #1-#21 (interface and pre-processing)
April: Tutorials #22-#24 (source estimation and time-frequency)
May-June: Tutorials #25-#28 (statistics and workflows)
July-Sept: Cross-validation of the pipeline and the results with MNE, FieldTrip and SPM
October: Presentation during a satellite meeting at the Biomag 2016 conference
Nov-Dec: Connectivity tutorial
Tutorial 10: Power spectrum and frequency filters
[CODE]
- Richard, John, Sylvain: Finish the evaluation of the band-pass filters used in Brainstorm
- Francois: Mark with an extended event the time segments that we cannot trust (edge effect)
- Francois: Add warning if recordings are not long enough
[ONLINE DOC]
Richard, John, Sylvain: Section What filters to apply?
Richard, John, Sylvain: Section Filters specifications
Tutorial 12: Artifact detection
[ONLINE DOC]
Beth: Adding examples of the different detection processes. Section Other detection processes
Tutorial 13: Artifact cleaning with SSP
[CODE]
Francois: Check the length needed to filter the recordings (after finishing #10)
Section SSP Algorithm
Tutorial 15: Import epochs
[ONLINE DOC]
Richard, Sylvain, John, Francois: Define recommendations for epoch lengths (after finishing #10)
Section Epoch length
Tutorial 20: Head modelling
[ONLINE DOC]
- John, Richard, Sylvain: In-depth review of this sensitive tutorial
John, Richard, Sylvain: Section References
Tutorial 22: Source estimation
[CODE]
- John: Noise covariance: Cannot regularize GRAD and MAG at the same time ?
- John: Inverse code: NAI
- John: Inverse code: Mixed head models
- Francois: Make the "no regularization" option the default? (changes a lot the range of values)
- Francois: Remove the warning messages in the interface
Francois: Call FieldTrip headmodels and beamformers
- Francois: Add note in Elekta tutorial: Process MAG and GRAD separately
[ONLINE DOC]
John, Richard, Sylvain: Section Source estimation options
John, Richard, Sylvain: Section Advanced options
John, Richard, Sylvain: Section Equations
John, Richard, Sylvain: Section References
- John, Richard, Sylvain: Why are dSPM values 2x lower than Z-score ?
- John, Richard, Sylvain: In-depth review of this sensitive tutorial
Tutorial 24: Time-frequency
[CODE]
- Francois: Enable option "Hide edge effects" for Hilbert (after finishing #10)
[ONLINE DOC]
- Francois: Hilbert: Link back to the filters tutorial (after finishing #10)
Tutorial 28: Scripting
- Not evaluated yet
Final steps
- Francois: Check that the script tutorial_introduction.m produces the same output as tutorials
- Francois: Check all the links in all the pages
Francois: Reference on ResearchGate, Academia and Google Scholar
http://neuroimage.usc.edu/brainstorm/Tutorials/AllIntroduction
Connectivity
- Not documented at all
- Richard, Sylvain: Define example dataset and precise results to obtain from them
Richard: How to deal with unconstrained sources?
http://neuroimage.usc.edu/forums/showthread.php?2401- Richard: How to assess significance from connectivity matrices?
- Francois: Preparation of a tutorial
Other analysis scenarios
Beth: Update or delete: http://neuroimage.usc.edu/brainstorm/Tutorials/WorkflowGuide
- Francois: Update all the tutorials (100+ pages)
- Francois: Remove useless images from all tutorials
- Francois: Add number of pages for all the tutorials
- Francois: Split list in columns