|
Size: 102
Comment:
|
Size: 1715
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 3: | Line 3: |
Detection, localization and labeling of SEEG depth electrodes is a vital step in studying brain activity. This tutorial can be considered as a precursor to the [[https://neuroimage.usc.edu/brainstorm/Tutorials/Epileptogenicity|Epileptogenicity]] tutorial. __'''NOT FOR CLINICAL USE'''__:<<BR>>The performance characteristics of the methods and software implementation presented in this tutorial have not been certified as medical devices and should be used for research purposes only. <<TableOfContents(3,2)>> == Download and installation == * '''Requirements''': You have already followed all the introduction tutorials and you have a working copy of Brainstorm installed on your computer. * '''CT2MRIREG''': If you are running Brainstorm from the MATLAB environment, for the coregistration between CT and MRI volumes, you need to have the ct2mrireg Anatomy plugin installed on your computer, as a [[https://neuroimage.usc.edu/brainstorm/Tutorials/Plugins|Brainstorm plugin]]. * '''Download the dataset''': * Go to the [[http://neuroimage.usc.edu/bst/download.php|Download]] page of this website, and download the file: '''tutorial_seeg_contact_localization.zip''' * Unzip it in a folder that is not in any of the Brainstorm folders (program folder or database folder) * '''Brainstorm''': * Start Brainstorm (MATLAB scripts or stand-alone version). * Select the menu '''File > Create new protocol'''. Name it "'''TutorialSeegImplantation'''" and select the options: <<BR>>"'''No, use individual anatomy'''",<<BR>>"'''No, use one channel file per acquisition run'''". |
iEEG Contact Localization (UNDER CONSTRUCTION)
Authors: Chinmay Chinara, Takfarinas Medani.
Detection, localization and labeling of SEEG depth electrodes is a vital step in studying brain activity. This tutorial can be considered as a precursor to the Epileptogenicity tutorial.
NOT FOR CLINICAL USE:
The performance characteristics of the methods and software implementation presented in this tutorial have not been certified as medical devices and should be used for research purposes only.
Contents
Download and installation
Requirements: You have already followed all the introduction tutorials and you have a working copy of Brainstorm installed on your computer.
CT2MRIREG: If you are running Brainstorm from the MATLAB environment, for the coregistration between CT and MRI volumes, you need to have the ct2mrireg Anatomy plugin installed on your computer, as a Brainstorm plugin.
Download the dataset:
Go to the Download page of this website, and download the file: tutorial_seeg_contact_localization.zip
- Unzip it in a folder that is not in any of the Brainstorm folders (program folder or database folder)
Brainstorm:
- Start Brainstorm (MATLAB scripts or stand-alone version).
Select the menu File > Create new protocol. Name it "TutorialSeegImplantation" and select the options:
"No, use individual anatomy",
"No, use one channel file per acquisition run".