|
Size: 2912
Comment:
|
Size: 2847
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 9: | Line 9: |
| = SEEG Spikes Modeling = ''Authors: the park City workshop team'' |
|
| Line 10: | Line 12: |
| = SEEG epileptogenicity maps = ''Authors: Francois Tadel, Olivier David.'' |
= Introduction = This tutorial introduces some concepts that are specific to the management of intracranial, SEEG recordings in the Brainstorm environment, and explains how to compute maps of epileptogenicity from ictal recordings. It is based on a clinical case from the XXX University Hospital, USA. |
| Line 13: | Line 15: |
| This tutorial introduces some concepts that are specific to the management of intracranial, SEEG recordings in the Brainstorm environment, and explains how to compute maps of epileptogenicity from ictal recordings. It is based on a clinical case from the Grenoble University Hospital, France. Note that the operations used here are not detailed, the goal of this tutorial is not to introduce Brainstorm to new users. For in-depth explanations of the interface and theoretical foundations, please refer to the [[http://neuroimage.usc.edu/brainstorm/Tutorials#Get_started|introduction tutorials]]. Another tutorial is available for processing the same dataset with the [[https://f-tract.eu/tutorials/|ImaGIN toolbox]]. |
Note that the operations used here are not detailed, the goal of this tutorial is not to introduce Brainstorm to new users. For in-depth explanations of the interface and theoretical foundations, please refer to the [[http://neuroimage.usc.edu/brainstorm/Tutorials#Get_started|introduction tutorials]]. Another tutorial is available for processing the same dataset with the [link to the park city workshop]. |
| Line 21: | Line 21: |
| Line 27: | Line 25: |
| * Go to the [[http://neuroimage.usc.edu/bst/download.php|Download]] page of this website, and download the file: '''tutorial_epimap_bids.zip''' | * Go to the [[http://neuroimage.usc.edu/bst/download.php|Download]] page of this website, and download the file: '''xxxx.zip''' |
| Line 35: | Line 33: |
| Line 38: | Line 34: |
| Line 40: | Line 35: |
| Line 42: | Line 36: |
| Line 46: | Line 37: |
| Line 51: | Line 39: |
Describe Tutorials/sEEGSpikesModeling here.
The Park City Workshop will be converted into full Brainstorm tutorial;
refer to this page: https://neuroimage.usc.edu/brainstorm/WorkshopParkCity2024
and this walkthrough https://box.bic.mni.mcgill.ca/s/EVkBFIN9ArgcY31
SEEG Spikes Modeling
Authors: the park City workshop team
Introduction
This tutorial introduces some concepts that are specific to the management of intracranial, SEEG recordings in the Brainstorm environment, and explains how to compute maps of epileptogenicity from ictal recordings. It is based on a clinical case from the XXX University Hospital, USA.
Note that the operations used here are not detailed, the goal of this tutorial is not to introduce Brainstorm to new users. For in-depth explanations of the interface and theoretical foundations, please refer to the introduction tutorials. Another tutorial is available for processing the same dataset with the [link to the park city workshop].
NOT FOR CLINICAL USE:
The performance characteristics of the methods and software implentation presented in this tutorial have not been certified as medical devices and should be used for research purposes only.
Contents
Download and installation
Requirements: You have already followed all the introduction tutorials and you have a working copy of Brainstorm installed on your computer.
SPM: If you are running Brainstorm from the Matlab environment, for the coregistration between pre- and post-implantation MRI volumes, you need to have the SPM12 toolbox installed on your computer, as a Brainstorm plugin or a custom installation.
With the stand-alone compiled version of Brainstorm: all the needed SPM scripts have been compiled and included in the executable.Download the dataset:
Go to the Download page of this website, and download the file: xxxx.zip
- Unzip it in a folder that is not in any of the Brainstorm folders (program folder or database folder)
Brainstorm:
- Start Brainstorm (Matlab scripts or stand-alone version).
Select the menu File > Create new protocol. Name it "TutorialEpimap" and select the options:
"No, use individual anatomy",
"No, use one channel file per acquisition run".
Import the anatomy
Pre-implantation MRI
Post-implantation MRI/CT
Contacts positions
Display the depth electrodes
Generate default surfaces
Access the recordings
Link the recordings
Display the SEEG recordings