Publications

Reference paper

Tadel F, Baillet S, Mosher JC, Pantazis D, Leahy RM, “Brainstorm: A User-Friendly Application for MEG/EEG Analysis,” Computational Intelligence and Neuroscience, vol. 2011, Article ID 879716, 13 pages, 2011. doi:10.1155/2011/879716 [ html, pdf ]

Please cite Brainstorm reference paper in your publications if you have used our software for your analysis: How to cite Brainstorm.

Conferences, workshops, seminars...

• HBM 2011: June 26-30, 2011. Quebec City, Canada.

• BIOMAG 2010: March 28 - April 1, 2010. Dubrovnik, Croatia.

• HBM 2010: June 6 - June 10, 2010. Barcelona, Spain.

• MEG & language worshop: Tadel F. October 2009. Neurospin, Paris, France. Slides.

• HBM 2009: Baillet S, Tadel F. June 2009. San Francisco, USA.

• MATLAB and biotechnologies seminar: Baillet S, Tadel F. October 2008. Paris, France.

• HBM 2008: Baillet S, Tadel F. June 2008. Melbourne, Australia.

Publications citing Brainstorm

2011

• Cottereau B, Lorenceau J, Gramfort A, Clerc M, Thirion B, Baillet S (2011)
  "Phase delays within visual cortex shape the response to steady-state visual stimulation," Neuroimage, 54(3):1919-29

• Khan S, Lefevre J, Ammari H, Baillet S (2011)
  "Feature detection and tracking in optical flow on non-flat manifolds," Pattern Recognition Letters, 32(15):2047-2052

• Zamrini E, Maestu F, Pekkonen E, et al. (2011)
  "Magnetoencephalography as a Putative Biomarker for Alzheimer's Disease," International Journal of Alzheimer's Disease, 2011, Article ID 280289

2010

• Ales J, Carney T, Klein SA (2010)
  "The folding fingerprint of visual cortex reveals the timing of human V1 and V2," Neuroimage, 49(3):2494-502

• Bernal S, Dehaene-Lambertz G, Millotte S, Christophe A (2010)
  "Two-year-olds compute syntactic structure on-line," Developmental Science, 13(1):69–76

• Brown K, Ortigue S, Grafton ST, Carlson JM (2010)
  "Improving human brain mapping via joint inversion of brain electrodynamics and the BOLD signal," Neuroimage, 49(3):2401–2415

• Casali AG, Casarotto S, Rosanova M, Mariotti M, Massimini M (2010)
  "General indices to characterize the electrical response of the cerebral cortex to TMS," Neuroimage, 49(2):1459–1468

• Casarotto S, Romero Lauro LJ, Bellina V, Casali AG, Rosanova M (2010)
  "EEG Responses to TMS Are Sensitive to Changes in the Perturbation Parameters and Repeatable over Time," PLoS ONE, 5(4): e10281

• D’Hondt F, Lassonde M, Collignon O, Dubarry A-S, Robert M, Rigoulot S, Honoré J, Lepore F and Sequeira H (2010)
  "Early brain-body impact of emotional arousal," Front. Hum. Neurosci, 4:33

• He W, Song X, Xu Z, Luo H (2010)
  "Magnetic Induction Tomography: Simulation Study on the Forward Problem," LSMS/ICSEE 2010, 113-121

• Fort A, Martin R, Jacquet-Andrieu A, Combe-Pangaud C, Foliot G, Daligault S, Delpuech C (2010)
  "Attentional demand and processing of relevant visual information during simulated driving: A MEG study," Brain Res, 1363:117-27

• Pegado F, Bekinschtein T, Chausson N, Dehaene S, Cohen L, Naccache L (2010)
  "Probing the lifetimes of auditory novelty detection processes," Neuropsychologia, 48(10):3145-54.

• Robitaille N, Marois R, Todd J, Grimault S, Cheyne D, Jolicœur P (2010)
  "Distinguishing between lateralized and nonlateralized brain activity associated with visual short-term memory: fMRI, MEG, and EEG evidence from the same observers," Neuroimage, 53(4): 1334-1345

• Tzelepi A, Laskaris N, Amditis A, Kapoula Z (2010)
  "Cortical activity preceding vertical saccades: A MEG study," Brain Res, 1321:105-16

• Vatta F, Meneghini F, Esposito F, Mininel S, Di Salle F (2010)
  "Realistic and spherical head modeling for EEG Forward Problem Solution: A Comparative Cortex-Based Analysis," Comput Intell Neurosci, 2010:972060

• Vecchiato G, Astolfi L, Cincotti F, De Vico Fallani F, Sorrentino DM, Mattia D, Salinari S, Bianchi L, Toppi J, Aloise F, Babiloni F (2010)
  "Patterns of cortical activity during the observation of Public Service Announcements and commercial advertisings," Nonlinear Biomed Phys, 4 Suppl 1:S3

2009

• Amor F, Baillet S, Navarro V, Adam C, Martinerie J, Quyen MLV (2009)
  "Cortical local and long-range synchronization interplay in human absence seizure initiation," Neuroimage, 45(3):950-96

• Bekinschtein T, Dehaene S, Rohaut B, Tadel F, Cohen L, Naccache L (2009)
  "Neural signature of the conscious processing of auditory regularities," PNAS, 106(5):1672-1677.

• Carota F, Posada A, Harquel S, Delpuech C, Bertrand O, Sirigu A (2009)
  "Neural Dynamics of the Intention to Speak," Cereb Cortex, 20(8):1891-7

• Chaumon M, Hasboun D, Baulac M, Adam C, Tallon-Baudry C (2009)
  "Unconscious contextual memory affects early responses in the anterior temporal lobe," Brain Res,1285:77-87

• Bristow D, Dehaene-Lambertz G, Mattout J, Soares C, Gliga T, Baillet S, Mangin JF (2009)
  "Hearing faces: how the infant brain matches the face it sees with the speech it hears," J Cogn Neurosci, 21(5):905-21

• Dalal SS, Baillet S, Adam C, Ducorps A, Schwartz D, Jerbi K, Bertrand O, Garnero L, Martinerie J, Lachaux JP (2009)
  "Simultaneous MEG and intracranial EEG recordings during attentive reading," Neuroimage, 45(4):1289-304

• Henson RN, Mattout J, Phillips C, Friston KJ (2009)
  "Selecting forward models for MEG source-reconstruction using model-evidence," Neuroimage, 46(1):168–176

• Henson R, Mouchlianitis E, Friston KJ (2009)
  "MEG and EEG data fusion: Simultaneous localisation of face-evoked responses," Neuroimage, 47(2):581–589

• Khemakhem R, Zouch W, Ben Hamida A, Taleb-Ahmed A, Feki L (2009)
  "EEG Source Localization Using the Inverse Problem Methods", IJCSNS, 9(4):408-415

• Moratti S, Keil A (2009)
  "Not What You Expect: Experience but not Expectancy Predicts Conditioned Responses in Human Visual and Supplementary Cortex," Cereb Cortex, 19(12):2803-9

• Robitaille N, Grimault S, Jolicœur P (2009)
  "Bilateral parietal and contralateral responses during maintenance of unilaterally encoded objects in visual short-term memory: Evidence from magnetoencephalography," Psychophysiology, 46(5):1090-1099

• Rosanova M, Casali A, Bellina V, Resta F, Mariotti M, Massimini M (2009)
  "Natural frequencies of human corticothalamic circuits," J Neurosci, 29(24):7679-85

• Rudrauf D, Lachaux JP, Damasio A, Baillet S, Hugueville L, Martinerie J, Damasio H, Renault B (2009)
  "Enter feelings: somatosensory responses following early stages of visual induction of emotion," Int J Psychophysiol, 72(1):13-23

2008

• Grova C, Daunizeau J, Kobayashi E, Bagshaw AP, Lina JM, Dubeau F, Gotman J (2008)
  "Concordance between distributed EEG source localization and simultaneous EEG-fMRI studies of epileptic spikes," NeuroImage, 39(2):755-774

• Izard V, Dehaene-Lambertz G, Dehaene S (2008)
  "Distinct cerebral pathways for object identity and number in human infants," PLoS Biol, 6(2):e11

• Rudrauf D, David O, Lachaux JP, Kovach CK, Martinerie J, Renault B, Damasio A (2008)
  "Rapid Interactions between the Ventral Visual Stream and Emotion-Related Structures Rely on a Two-Pathway Architecture," J Neurosci, 28(11):2793-2803

• Senot P, Baillet S, Renault B, Berthoz A (2008)
  "Cortical dynamics of anticipatory mechanisms in interception: a neuromagnetic study," J Cogn Neurosci, 20(10):1827-38

• Spyrou L, Sanei S (2008)
  "Source localization of event-related potentials incorporating spatial notch filters," IEEE Trans Biomed Eng, 55(9):2232-9

• Van Gaal S, Ridderinkhof R, Fahrenfort JF, Scholte HS, Lamme VAF (2008)
  "Frontal Cortex Mediates Unconsciously Triggered Inhibitory Control," J Neurosci, 28(32):8053-8062

2007

• Attal Y, Bhattacharjee M, Yelnik J, Cottereau B, Lefèvre J, Okada Y, Bardinet E, Chupin M, Baillet S (2007)
  "Modeling and detecting deep brain activity with MEG & EEG," Conf Proc IEEE Eng Med Biol Soc, 2007:4937-40.

• Conty L, N'Diaye K, Tijus C, George N (2007)
  "When eye creates the contact! ERP evidence for early dissociation between direct and averted gaze motion processing," Neuropsychologia, 45:3024-3037

• Cottereau B, Jerbi K, Baillet S (2007)
  "Multiresolution imaging of MEG cortical sources using an explicit piecewise model," Neuroimage, 38(3):439-51

• Del Cul A, Baillet S, Dehaene S (2007)
  "Brain dynamics underlying the nonlinear threshold for access to consciousnes," PLoS Biology, 5(10):e260

• Dossevi A, Garnero L, Ammari H (2007)
  "Geodesic and functional K-means algorithms. A bounding and multistart procedure to recover functional networks from MEG/EEG recordings," IJBEM, 9(4):223-32

• Gramfort A, Cottereau B, Clerc M, Thirion B, Baillet S (2007)
  "Challenging the estimation of cortical activity from MEG with simulated fMRI-constrained retinotopic maps," Conf Proc IEEE Eng Med Biol Soc, 2007:4945-8

• Henson RN, Mattout J, Singh KD, Barnes GR, Hillebrand A, Friston K (2007)
  "Population-level inferences for distributed MEG source localization under multiple constraints: Application to face-evoked fields," Neuroimage, 38(3):422-438

• Jerbi K, Lachaux JP, N'Diaye K, Pantazis D, Leahy RM, Garnero L, Baillet S (2007)
  "Coherent neural representation of hand speed in humans revealed by MEG imaging," PNAS, 104(18):7676-7681

• Stenroosa M, Mantynena V, Nenonenc J (2007)
  "A Matlab library for solving quasi-static volume conduction problems using the boundary element method", Comput Methods Programs Biomed, 88(3):256-63

• Nara T, Oohama J, Hashimoto M, Takeda T, Ando S (2007)
  "Direct reconstruction algorithm of current dipoles for vector magnetoencephalography and electroencephalography," Phys Med Biol, 52(13):3859-79

• Weisend MP, Hanlon FM, Montano R, Ahlfors SP, Leuthold AC, Pantazis D, Mosher JC, Georgopoulos AP, Hamalainen MS, Aine CJ (2007)
  "Paving the Way for Cross-site Pooling of Magnetoencephalography (MEG) Data," International Congress Series, 1300:615--618

2006

• Daunizeau J, Mattout J, Clonda D, Goulard B, Benali H, Lina, JM (2006)
  "Bayesian spatio-temporal approach for EEG source reconstruction: conciliating ECD and distributed models", IEEE Transactions on Biomedical Engineering, 53(3):503-516

• David O, Kiebel SJ, Harrison LM, Mattout J, Kilner JM, Friston KJ (2006)
  "Dynamic causal modeling of evoked responses in EEG and MEG," Neuroimage, 30(4):1255-72

• Friston K, Henson K, Phillips C, Mattout J (2006)
  "Bayesian Estimation of Evoked and Induced Responses," Hum Brain Mapp, 27(9):722–735

• Grova C, Daunizeau J, Lina JM (2006)
  "Evaluation of EEG localization methods using realistic simulations of interictal spikes", Neuroimage, 29(3):734-753

2005

• Sergent C, Baillet S, Dehaene S (2005)
  "Timing of the brain events underlying access to consciousness during the attentional blink," Nat Neurosci, 8(10):1391-1400

• Amor F, Rudrauf D, Navarro V (2005)
  "Imaging brain synchrony at high spatio-temporal resolution: application to MEG signals during absence seizures," Signal Processing, 85(11):2101-11

• N'diaye K, Pfeuty M, Ragot R (2005)
  "Parsing the temporal evolution of brain activity in duration discrimination with electro- and magneto-encephalography," J Cog Neurosci, 46-46 Suppl. S 2005

2004

• N'Diaye K, Ragot R, Garnero L (2004)
  "What is common to brain activity evoked by the perception of visual and auditory filled durations? A study with MEG and EEG co-recordings," Cogn Brain Res, 21(2):250-268

Publications on Brainstorm's code

2011

• Tadel F, Baillet S, Mosher JC, Pantazis D, Leahy RM (2011)
  "Brainstorm: A user friendly application for MEG/EEG analysis," Comput Intell Neurosci, vol. 2011, Article ID 879716, 13 pages, 2011. doi:10.1155/2011/879716 [ html, pdf ]

2000-2010

• Hamalainen MS, Lin FH, Mosher JC (2010)
  “Anatomically and functionally constrained minimum-norm estimates,” in MEG: An Introduction to Methods, Hansen PC, Kringelbach ML, Salmelin R, Eds. Oxford: Oxford University Press.

• Lefèvre J, Baillet S (2009)
  "Optical flow approaches to the identification of brain dynamics", Hum Brain Mapp, 30(6):1887-1897

• Soto JLP, Pantazis D, Jerbi K, Lachaux JP, Garnero L, Leahy RM (2009)
  "Detection of Event-Related Modulations of Oscillatory Brain Activity with Multivariate Statistical Analysis of MEG Data," Hum Brain Mapp, 30(6):1922-1934

• Pantazis D, Nichols TE, Baillet S, Leahy RM (2005)
  "A Comparison of Random Field Theory and Permutation Methods for the Statistical Analysis of MEG data", Neuroimage, 25(2):355-68

• Darvas F, Rautiainen M, Pantazis D, Benali H, Baillet S, Mosher JC, Garnero L, Leahy RM (2005)
  "Investigations of dipole localization accuracy in MEG using the bootstrap", Neuroimage, 25(2):383-394

• Jerbi K, Baillet S, Mosher JC, Nolte G, Garnero L, Leahy RM (2004)
  “Localization of Realistic Cortical Activity in MEG using Current Multipoles,” Neuroimage, 22(2):779-93

• Ossadtchi A, Baillet A, Mosher JC, Thyerlei D, Sutherling W, Leahy RM (2004)
  "Automated Interictal Spike Detection and Source Localization in MEG using ICA and Spatio-Temporal Clustering," Clinic Neurophy, 115(3):508-22

• Pantazis D, Nichols TS, Baillet S, Leahy RM (2003)
  "Spatiotemporal Localization of Significant Activation in MEG using Permutation Tests," Inf Process Med Imaging, 18:512-23

• Jerbi K, Mosher JC, Baillet S, Leahy RM (2002)
  "On MEG Forward Modelling using Multipolar Expansions," Phys Med Biol, 47(4):523-55

• Baillet S, Mosher JC, Leahy RM (2001)
  "Electromagnetic Brain Mapping," IEEE Signal Processing Magazine, 18(6):14-30 pdf

• Ermer JJ, Mosher JC, Baillet S, Leahy RM (2001)
  "Rapidly recomputable EEG forward models for realistic head shapes," Phys Med Biol, 46(4):1265-1281 pdf

• Ermer JJ, Mosher JC, Huang MX, Leahy RM (2000)
  "Paired MEG data set source localization using recursively applied and projected (RAP) MUSIC," IEEE Trans Biomed Eng, 47(9):1248-60 pdf

• Mosher JC, Baillet S, Jerbi K, Leahy RM (2000)
  "MEG multipolar modeling of distributed sources using RAP-MUSIC," Signals, Systems and Computers 2000, Conference Record of the Thirty-Fourth Asilomar Conference, 1:318-322 pdf

1990-2000

• Mosher JC, Baillet S, Leahy RM (1999)
  "EEG Source Localization and Imaging Using Multiple Signal Classification Approaches," J Clin Neurophysiol, 16(3):225-38

• Mosher JC, Leahy RM, Shattuck DW, Baillet S (1999)
  "MEG Source Imaging using Multipolar Expansions," In 16th Conference on Information Processing in Medical Imaging, LCNS, pp. 15–28pdf

• Mosher JC, Leahy RM, Lewis PS (1999)
  "EEG and MEG: forward solutions for inverse methods," IEEE Trans Biomed Eng, 46(3):245-59 pdf

• Mosher JC, Leahy RM (1999)
  "Source localization using recursively applied and projected (RAP) MUSIC," IEEE Trans Biomed Eng, 47(9):1248-60 pdf

• Huang MX, Mosher JC, Leahy RM (1999)
  "A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG," Phys Med Biol, 44:423-440 pdf

• Mosher JC, Leahy RM (1998)
  "Recursive MUSIC: A framework for EEG and MEG source localization," IEEE Trans Biomed Eng, 45(11):1342 -54 pdf

• Leahy RM, Mosher JC, Spencer ME, Huang MX, Lewine JD (1998)
  "A study of dipole localization accuracy for MEG and EEG using a human skull phantom. Electroencephalography," Clin Neurophysiol, 107(2):159-73 pdf

• Mosher JC, Leahy RM, Huang MX, Spencer ME (1997)
  "Modeling versus Accuracy in EEG and MEG data," NFSI '97 in Biomedizinische Technik, 42(1):5-8 pdf

• Phillips JW, Leahy RM, Mosher JC, Timsari B (1997)
  "Imaging neural activity using MEG and EEG," IEEE Eng Med Biol Mag, 16(3):34-42 pdf

• Phillips JW, Leahy RM, Mosher JC (1997)
  "MEG-based imaging of focal neuronal current sources," IEEE Trans Med Imaging, 16(3):338-48pdf

• Phillips JW, Leahy RM, Mosher JC (1996)
  "Dynamic Bayesian imaging using the magnetoencephalogram," Engineering in Medicine and Biology Society, 18th Annual International Conference of the IEEE, 2: 817-18pdf

• Phillips J, Leahy RM, Mosher JC (1996)
  "Dynamic MEG Imaging of Focal Neuronal Sources," Proc IEEE Nucl Sci Symp and Medical Imag Conf, 1928-32. pdf

• Mosher JC, Leahy RM, Lewis PS (1995)
  "Matrix kernels for MEG and EEG source localization and imaging," Acoustics, Speech, and Signal Processing, ICASSP-95, 5:2943-6pdf

• Lewis PS, Mosher JC, Leahy RM (1995)
  "Neuromagnetic source reconstruction," Acoustics, Speech, and Signal Processing, ICASSP-95, 5:2911-4pdf

• Mosher JC, Leahy RM, Lewis PS (1993)
  "Biomagnetic localization from transient quasi-static events," Acoustics, Speech, and Signal Processing, ICASSP-93, 1:91-4 pdf

• Mosher JC, Leahy RM, Lewis P (1992)
  "Multiple dipole modeling and localization from spatiotemporal MEG data," IEEE Trans Biomed Eng, 541-57 pdf

• Mosher JC, Spencer ME, Leahy RM, Lewis PS (1992)
  "Error bounds for MEG and EEG source localization," Signals, Systems and Computers, 1992, Conference Record of The Twenty-Sixth Asilomar Conference, 150-5 pdf

Other

• 50 successful open source projects that are changing medicine, #22, link.

References

List of references that are cited in the Brainstorm paper:

[1] S Baillet, JC Mosher, and RM Leahy, "Electromagnetic brain mapping," IEEE Signal processing magazine, vol. 18, pp. 14-30, 2001.

[2] M Huang, J Mosher, and R Leahy, "A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG," Phys. Med. Biol., vol. 44, no. 2, pp. 423–440, 1999.

[3] F Darvas, JJ Ermer, JC Mosher, and Leahy RM, "Generic head models for atlas-based EEG source analysis," Human Brain Mapping, vol. 27, no. 2, pp. 129-143, 2006.

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[16] JLP Soto, D Pantazis, K Jerbi, JP Lachaux, S Baillet, and RM Leahy, "Canonical Correlation Analysis Applied to Functional Connectivity in MEG," IEEE International Symposium on Biomedical Imaging (ISBI), April 2010.

[17] D Pantazis, TE Nichols, S Baillet, and RM Leahy, "A Comparison of Random Field Theory and Permutation Methods for the Statistical Analysis of MEG data," Neuroimage, vol. 25, pp. 355-368, April 2005.

[18] S Baillet, JC Mosher, and RM Leahy, "Brainstorm beta release: a Matlab software package for MEG signal processing and source localization and visualization," Neuroimage, vol. 11, p. 915, 2000.

[19] JC Mosher, S Baillet, F Darvas, D Pantazis, E Kucukaltun-Yildirim, and RM Leahy, "Brainstorm Electromagnetic Imaging Software," IJBEM, vol. 7, no. 2, pp. 189-190, 2005.

[20] A Tzelepi, N Laskaris, A Amditis, and Z Kapoula, "Cortical activity preceding vertical saccades: A MEG study," Brain Research, 2010.

[21] F Amor, S Baillet, V Navarro, C Adam, J Martinerie, and MLV Quyen, "Cortical local and long-range synchronization interplay in human absence seizure initiation," Neuroimage, vol. 45, no. 3, pp. 950-962, April 2009.

[22] T Bekinschtein, S Dehaene, B Rohaut, F Tadel, L Cohen, and L Naccache, "Neural signature of the conscious processing of auditory regularities," PNAS, vol. 106, pp. 1672-1677, February 2009.

[23] F Carota, A Posada, S Harquel, C Delpuech, O Bertrand, and A Sirigu, "Neural Dynamics of the Intention to Speak," Cerebral Cortex, 2009.

[24] M Chaumon, D Hasboun, M Baulac, C Adam, and C Tallon-Baudry, "Unconscious contextual memory affects early responses in the anterior temporal lobe," Brain research, 2009.

[25] S Moratti and A Keil, "Not What You Expect: Experience but not Expectancy Predicts Conditioned Responses in Human Visual and Supplementary Cortex," Cerebral Cortex, 2009.

[26] D Pantazis, GV Simpson, DL Weber, CL Dale, TE Nichols, and RM Leahy, "A novel ANCOVA design for analysis of MEG data with application to a visual attention study," Neuroimage, vol. 44, no. 1, pp. 164–174, 2009.

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[29] The MoinMoin Wiki Engine, http://moinmo.in/

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