Publications

Reference article

To cite in your publications featuring Brainstorm: thank you!

Tadel F, Baillet S, Mosher JC, Pantazis D, Leahy RM (2011) Brainstorm: A User-Friendly Application for MEG/EEG Analysis, Computational Intelligence and Neuroscience, vol. 2011, Article ID 879716, 13 pages. doi:10.1155/2011/879716 [ html, pdf ]

See also: How to cite Brainstorm.

Conferences & workshops

• HBM 2013: June 16-21, Seattle, USA. Registration Conference link

• SPR annual meeting 2013: October 1-6, 2013, Florence, Italy. Registration Conference link

• Summer School in Cognitive Science: July 11, 2012, UQAM, Montreal, Canada. Link.

• Biomag 2012: August 26-31, 2012. Paris, France. Link

• MIT MEG symposium and workshop: April 27-28, 2012, Boston, USA. Link

  • Watch lecture from Sylvain Baillet @ the MIT's MEG Symposium

• Canada MEG Consortium worshop: Nov 17-19, 2011. Montreal, Canada. Link

• HBM 2011: June 26-30, 2011. Quebec City, Canada.

• Biomag 2010: March 28 - April 1, 2010. Dubrovnik, Croatia.

• HBM 2010: June 6 - June 10, 2010. Barcelona, Spain.

• MEG & language workshop: Tadel F. October 2009. Neurospin, Paris, France. Slides.

• HBM 2009: Baillet S, Tadel F. June 2009. San Francisco, USA.

• MATLAB and biotechnologies seminar: Baillet S, Tadel F. October 2008. Paris, France.

• HBM 2008: Baillet S, Tadel F. June 2008. Melbourne, Australia.

Publications from Brainstorm Users

Videos

• Balderston NL, Schultz DH, Baillet S, Helmstetter FJ
  How to Detect Amygdala Activity with Magnetoencephalography using Source Imaging

2013

1. Attal Y, Schwartz D (2013) Assessment of Subcortical Source Localization Using Deep Brain Activity Imaging Model with Minimum Norm Operators: A MEG Study. PLoS ONE 8(3): e59856. doi:10.1371/journal.pone.0059856

2. Sheraz Khan, Alexandre Gramfort, Nandita R. Shetty, Manfred G. Kitzbichler, Santosh Ganesan, Joseph M. Moran, Su Mei Lee, John D. E. Gabrieli, Helen B. Tager-Flusberg, Robert M. Joseph, Martha R. Herbert, Matti S. Hämäläinen, and Tal Kenet
   Local and long-range functional connectivity is reduced in concert in autism spectrum disorders
   PNAS 2013 ; published ahead of print January 14, 2013, doi:10.1073/pnas.1214533110

3. McIntosh, A. R.; Vakorin, V.; Kovacevic, N.; Wang, H.; Diaconescu, A. & Protzner, A. B. Spatiotemporal Dependency of Age-Related Changes in Brain Signal Variability. Cereb Cortex, 2013

4. Narayan Puthanmadam Subramaniyam, Jukka Peltola, Jarno M. A. Tanskanen, Katrina Wendel-Mitoraj, Jari Hyttinen, Jaakko Malmivuo, Source Localization Based on Ictal Electroencephalographic Recordings, IFMBE Proceedings Volume 38, 2013, pp 26-30
   
   

2012

1. Ahrens H, Argin F, Klinkenbusch L
   "A comparison of minimum norm and MUSIC for a combined MEG/EEG sensor array," Adv. Radio Sci., 10, 99–104, 2012

2. Ahveninen J, Jääskeläinen IP, Belliveau JW, Hämäläinen M, Lin F-H, Raij T
   "Dissociable Influences of Auditory Object vs. Spatial Attention on Visual System Oscillatory Activity." PLoS ONE 7(6): e38511

3. Attal Y, Maess B, Friederici A, David O
   "Head models and dynamic causal modeling of subcortical activity using magnetoencephalographic/electroencephalographic data," Reviews in the Neurosciences (23) 1, pp. 85–95.

4. Barrés, V., Simons III, A., & Arbib, M. (2012). Synthetic event-related potentials: A computational bridge between neurolinguistic models and experiments. Neural Networks.

5. Bashar R, Li Y, Wen P
   "Study of EEGs from somatosensory cortex and Alzheimer's disease sources." International Journal of Biological and Life Sciences, 8 (2). pp. 62-66.

6. Bauer LO
   "A family history of substance dependence obscures the group differences in brain function associated with HIV-1 and ART," Drug and Alcohol Dependence, Available online 29 June 2012, ISSN 0376-8716

7. Billeke P, Zamorano F, Cosmelli D, Aboitiz F
   "Oscillatory Brain Activity Correlates with Risk Perception and Predicts Social Decisions," Cereb. Cortex, first published online Aug 31, 2012

8. Bonnefond M, Noveck I, Baillet S, Cheylus A, Delpuech C, Bertrand O, Fourneret P, Van der Henst JB
   "What MEG can reveal about inference making: The case of if...then sentences," Human Brain Mapping, available online

9. Clarke A, Taylor KI, Devereux B, Randall B, Tyler LK
   "From Perception to Conception: How Meaningful Objects Are Processed over Time," Cereb. Cortex, first published online Jan 23, 2012

10. Cojan, Y., Archimi, A., Cheseaux, N., Waber, L., & Vuilleumier, P. (2012). Time-course of motor inhibition during hypnotic paralysis: EEG topographical and source analysis. Cortex.

11. Cona F, Zavaglia M, Massimini M, Rosanova M, Ursino M
    "Computational Study of Rhythm Propagation Induced by TMS Stimuli in Different Brain Regions," Studies in Computational Intelligence, Vol 399/2012, 389-403 (Brainstorm & SPM5)

12. De Vico Fallani F, Chessa A, Valencia M, Chavez M, Astolfi L, Cincotti F, Mattia D, Babiloni F
    "Community structure in large-scale cortical networks during motor acts," Chaos, Solitons & Fractals, 45(5):603-610

13. Dumas G, Chavez M, Nadel J, Martinerie J
    "Anatomical Connectivity Influences both Intra- and Inter-Brain Synchronizations." PLoS ONE 7(5): e36414

14. Ibanez A, Cetkovich M, Petroni A, Urquina H, Baez S
    "The Neural Basis of Decision-Making and Reward Processing in Adults with Euthymic Bipolar Disorder or Attention-Deficit/Hyperactivity Disorder (ADHD)." PLoS ONE 7(5): e37306

15. Jain S, Gourab K, Schindler-Ivens S, Schmit BD
    EEG during pedaling: Evidence for cortical control of locomotor tasks. Clin Neurophysiol., Oct 1, doi: 10.1016/j.clinph.2012.08.021.

16. Johnson JS, Kundu B, Casali AG, Postle BR
    "Task-dependent changes in cortical excitability and effective connectivity: A combined TMS-EEG study." J Neurophysiol. Feb 8. (Brainstorm & SPM5)

17. Kamienkowski JE, Ison MJ, Quiroga RQ, Sigman M
    "Fixation-related potentials in visual search: A combined EEG and eye tracking study." Journal of Vision, 12(7):4, 1–20

18. Kaszuba K, Kostek B
    "Employing a Biofeedback Method Based on Hemispheric Synchronization in Effective Learning," Human–Computer Systems Interaction: Backgrounds and Applications, 99: pp 295-306

19. Lachat F, Farroni T, George N (2012) Watch Out! Magnetoencephalographic Evidence for Early Modulation of Attention Orienting by Fearful Gaze Cueing. PLoS ONE 7(11): e50499. doi:10.1371/journal.pone.0050499

20. Lina J, Chowdhury R, Lemay E, Kobayashi E, Grova C
    "Wavelet-based localization of oscillatory sources from magnetoencephalography data," IEEE Trans. Biomedical Engineering, available online

21. Lithari, C., Klados, M. A., Pappas, C., Albani, M., Kapoukranidou, D., Kovatsi, L., ... & Papadelis, C. L. (2012). Alcohol Affects the Brain's Resting-State Network in Social Drinkers. PLOS ONE, 7(10), e48641.

22. Liu Y, Paradis AL, Yahia-Cherif L, Tallon-Baudry C
    "Activity in the lateral occipital cortex between 200 and 300 ms distinguishes between physically identical seen and unseen stimuli." Front Hum Neurosci. 2012;6:211. Epub 2012 Jul 25.

23. Mangalathu-Arumana J, Beardsley SA, Liebenthal E
    "Within-subject joint independent component analysis of simultaneous fMRI/ERP in an auditory oddball paradigm", Neuroimage, 60:4, 2247-57

24. Niedeggen M, Michael L, Hesselmann G
    "Closing the Gates to Consciousness: Distractors Activate a Central Inhibition Process," Journal of Cognitive Neuroscience, 24:6, 1294-1304

25. Noguchi Y, Yokoyama T, Suzuki M, Kita S, Kakigi R
    "Temporal Dynamics of Neural Activity at the Moment of Emergence of Conscious Percept," Journal of Cognitive Neuroscience, in press

26. Pittau F, Dubeau F, Gotman J
    "Contribution of EEG/fMRI to the definition of the epileptic focus," Neurology, May 8, 2012 78:1479-1487

27. Rosanova M, Gosseries O, Casarotto S, Boly M, Casali AG, Bruno MA, Mariotti M, Boveroux P, Tononi G, Laureys S, Massimini M
    "Recovery of cortical effective connectivity and recovery of consciousness in vegetative patients," Brain, published online January 5, 2012 (Brainstorm & SPM5)

28. Slater JD, Khan S, Li Z, Catillo E
    "Characterization of Interictal Epileptiform Discharges with Time-Resolved Cortical Current Maps using the Helmholtz-Hodge Decomposition," Frontiers in Neurology, 3:00138

29. Solesio-Jofre, E., Lorenzo-López, L., Gutiérrez, R., López-Frutos, J. M., Ruiz-Vargas, J. M., & Maestú, F. (2012). Age-Related Effects in Working Memory Recognition Modulated by Retroactive Interference. The Journals of Gerontology Series A: Biological Sciences and Medical Sciences, 67(6), 565-572.

30. Subramaniyam, N. P., Peltola, J., Tanskanen, J. M., Wendel-Mitoraj, K., Hyttinen, J., & Malmivuo, J. (2012, October). Source Localization Based on Ictal Electroencephalographic Recordings. In International Symposium on Biomedical Engineering and Medical Physics, 10-12 October, 2012, Riga, Latvia (pp. 26-30). Springer Berlin Heidelberg.

31. Zarghami, T., Mir, H., & Al-Nashash, H. (2012). Calibration of Low Density EEG Sensor Arrays for Brain Source Localization. In Neural Information Processing (pp. 331-338). Springer Berlin/Heidelberg.

32. Zhang Y, Yan B, Wang M, Hu J, Lu H, Li P
    "Linking brain behavior to underlying cellular mechanisms via large-scale brain modeling and simulation," Neurocomputing, Available online 3 July 2012

2011

1. Aissani C, Cottereau B, Dumas G, Paradis AL, Lorenceau J.
   "Magnetoencephalographic signatures of visual form and motion binding". Brain Res. 1408:27-40.

2. Besserve M, Martinerie J, Garnero L
   "Improving quantification of functional networks with EEG inverse problem: evidence from a decoding point of view", Neuroimage, 55(4):1536-47

3. Campi C, Pascarella A, Sorrentino A, Piana M
   "Highly Automated Dipole EStimation (HADES)", Comput Intell Neurosci, 2011:982185

4. Casarotto S, Määttä S, Herukka SK, Pigorini A, Napolitani M, Gosseries O, Niskanen E, Könönen M, Mervaala E, Rosanova M, Soininen H, Massimini M
   "Transcranial magnetic stimulation-evoked EEG/cortical potentials in physiological and pathological aging", Neuroreport, 22(12):592-7

5. Cheng H, Zhang XT, Yan Hao, Bai LJ, Ai L, Wang FB, You YB, Chen P, Wang BG
   "Differential temporal neural responses of pain-related regions by acupuncture at acupoint ST36: a magnetoencephalography study", Chinese Medical Journal, 124(8):1229-1234

6. Cona F, Zavaglia M, Massimini M, Rosanova M, Ursino M.
   "A neural mass model of interconnected regions simulates rhythm propagation observed via TMS-EEG." Neuroimage. 2011 Aug 1;57(3):1045-58. Epub 2011 May 11.

7. Cottereau B, Lorenceau J, Gramfort A, Clerc M, Thirion B, Baillet S
   "Phase delays within visual cortex shape the response to steady-state visual stimulation," Neuroimage, 54(3):1919-29

8. Darvas F, Scherer R, Ojemann JG, Rao RP, Miller KJ, Sorensen LB
   "High gamma mapping using EEG", Neuroimage, 49(1):930-8

9. Dehaene S, "Conscious and Nonconscious Processes: Distinct Forms of Evidence Accumulation?", Biological Physics, 60:141-168

10. Furl N, Kumar S, Alter K, Durrant S, Shawe-Taylor J, Griffiths TD
    "Neural prediction of higher-order auditory sequence statistics," Neuroimage, 54(3):2267-77

11. Gamond L, George N, Lemaréchal JD, Hugueville L, Adam C, Tallon-Baudry C
    "Early influence of prior experience on face perception", Neuroimage, 54(2):1415-26

12. Hagler DJ, Dale AM
    "Improved method for retinotopy constrained source estimation of visual-evoked responses," Human Brain Mapping. doi: 10.1002/hbm.21461

13. Jerbi K, Vidal JR, Mattout J
    "Inferring hand movement kinematics from MEG, EEG and intracranial EEG: From brain-machine interfaces to motor rehabilitation," IRBM, 32(1):8-18

14. Khan S, Lefevre J, Ammari H, Baillet S
    "Feature detection and tracking in optical flow on non-flat manifolds," Pattern Recognition Letters, 32(15):2047-2052

15. Lalancette M, Quraan M, Cheyne D
    "Evaluation of multiple-sphere head models for MEG source localization," Phys Med Biol, 56(17):5621-35

16. Lehongre K, Ramus F, Villiermet N, Schwartz D, Giraud AL
    "Altered Low-Gamma Sampling in Auditory Cortex Accounts for the Three Main Facets of Dyslexia," Neuron, Volume 72, Issue 6, 22 December 2011, Pages 1080-1090, ISSN 0896-6273, 10.1016/j.neuron.2011.11.002.

17. Lorenzo-López L, Gutiérrez R, Moratti S, Maestú F, Cadaveira F, Amenedo E
    "Age-related occipito-temporal hypoactivation during visual search: Relationships between mN2pc sources and performance," Neuropsychologia, Volume 49, Issue 5, April 2011, Pages 858–865

18. Marti S, Sigman M, Dehaene S
    "A shared cortical bottleneck underlying Attentional Blink and Psychological Refractory Period", Neuroimage, Volume 59, Issue 3, 1 February 2012, Pages 2883-2898

19. Mitchell DJ, Cusack R
    "The temporal evolution of electromagnetic markers sensitive to the capacity limits of visual short-term memory", Front Hum Neurosci. 2011 Feb 15;5:18

20. Niedeggen M, Michael L, Hesselmann G
    "Closing the Gates to Consciousness: Distractors Activate a Central Inhibition Process," Journal of Cognitive Neuroscience : 1-11.

21. Simpson GV, Weber DL, Dale CL, Pantazis D, Bressler SL, Leahy RM, Luks TL
    "Dynamic Activation of Frontal, Parietal, and Sensory Regions Underlying Anticipatory Visual Spatial Attention," J Neurosci, 31(39):13880-13889

22. Sockeel S, Schwartz D, Martinerie J, Benali H, Garnero L
    "Detection of functional networks in EEG using spatial independent component analysis," IRBM, 32(1):Pages 35-41

23. Solesio-Jofre E, Lorenzo-López L, Gutiérrez R, López-Frutos JM, Ruiz-Vargas JM, Maestú F
    "Age effects on retroactive interference during working memory maintenance", Biol Psychol, 88(1):72-82

24. Sudre G, Parkkonen L, Bock E, Baillet S, Wang W, Weber DJ
    "rtMEG: A Real-Time Software Interface for Magnetoencephalography," Comput Intell Neurosci, vol. 2011

25. Tallon-Baudry C , Meyniel F , Bourgeois-Gironde S , 2011 Fast and Automatic Activation of an Abstract Representation of Money in the Human Ventral Visual Pathway. PLoS ONE 6(11): e28229. doi:10.1371/journal.pone.0028229

26. Vistoli D, Brunet-Gouet E, Lemoalle A, Hardy-Baylé MC, Passerieux C
    "Abnormal temporal and parietal magnetic activations during the early stages of theory of mind in schizophrenic patients", Soc Neurosci, 6(3):316-26

27. Vistoli D, Passerieux C, Houze B, Hardy-Baylé MC, Brunet-Gouet E
    "Neural basis of semantic priming in schizophrenia during a lexical decision task: a magneto-encephalography study," Schizophr Res, 130(1-3):114-22

28. Vistoli D, Brunet-Gouet E, Baup-Bobin E, Hardy-Bayle MC, Passerieux C
    "Anatomical and temporal architecture of theory of mind: A MEG insight into the early stages," Neuroimage, 54(2), pp: 1406–1414

29. Wacongne C, Labyt E, Van Wassenhove V, Bekinschtein T, Naccache L, Dehaene S
    "Evidence for a hierarchy of predictions and prediction errors in human cortex," PNAS, December 20, 2011 vol. 108 no. 51 20754-20759

30. Zamrini E, Maestu F, Pekkonen E
    "Magnetoencephalography as a Putative Biomarker for Alzheimer's Disease," Int J of Alzheimer's Disease, 2011, Article ID 280289

31. Zerouali Y, Herry C, Jemel B, Lina JM
    "Localization of synchronous cortical neural sources," IEEE Trans Biomed Eng. 2011

32. Zvyagintsev M, Nikolaev AR, Sachs O, Mathiak K
    "Early attention modulates perceptual interpretation of multisensory stimuli", Neuroreport, 22(12):586-91

2010

1. Ales J, Carney T, Klein SA
   "The folding fingerprint of visual cortex reveals the timing of human V1 and V2," Neuroimage, 49(3):2494-502

2. Bashar MR, Li Y, Wen P
   "A systematic study of head tissue inhomogeneity and anisotropy on EEG forward problem computing," Australas Phys Eng Sci Med, 33(1):11-21

3. Bernal S, Dehaene-Lambertz G, Millotte S, Christophe A
   "Two-year-olds compute syntactic structure on-line," Developmental Science, 13(1):69–76

4. Brown K, Ortigue S, Grafton ST, Carlson JM
   "Improving human brain mapping via joint inversion of brain electrodynamics and the BOLD signal," Neuroimage, 49(3):2401–2415

5. Campo P, Poch C, Parmentier FB, Moratti S, Elsley JV, Castellanos NP, Ruiz-Vargas JM, del Pozo F, Maestú F
   "Oscillatory activity in prefrontal and posterior regions during implicit letter-location binding," Neuroimage, 49(3):2807-15

6. Casali AG, Casarotto S, Rosanova M, Mariotti M, Massimini M
   "General indices to characterize the electrical response of the cerebral cortex to TMS," Neuroimage, 49(2):1459–1468

7. Casarotto S, Romero Lauro LJ, Bellina V, Casali AG, Rosanova M
   "EEG Responses to TMS Are Sensitive to Changes in the Perturbation Parameters and Repeatable over Time," PLoS ONE, 5(4): e10281

8. D’Hondt F, Lassonde M, Collignon O, Dubarry A-S, Robert M, Rigoulot S, Honoré J, Lepore F and Sequeira H
   "Early brain-body impact of emotional arousal," Front. Hum. Neurosci, 4:33

9. De Vico Fallani F, Maglione A, Babiloni F, Mattia D, Astolfi L, Vecchiato G, De Rinaldis A, Salinari S, Pachou E, Micheloyannis S
   "Cortical network analysis in patients affected by schizophrenia," Brain Topogr, 23(2):214-20

10. Hansen P, Kringelbach H, Salmelin R (eds.)
    "Meg: An Introduction to Methods.", Oxford University Press, 2010

11. He W, Song X, Xu Z, Luo H
    "Magnetic Induction Tomography: Simulation Study on the Forward Problem," LSMS/ICSEE 2010, 113-121

12. Fort A, Martin R, Jacquet-Andrieu A, Combe-Pangaud C, Foliot G, Daligault S, Delpuech C
    "Attentional demand and processing of relevant visual information during simulated driving: A MEG study," Brain Res, 1363:117-27

13. Meneghini F, Vatta F, Esposito F, Mininel S, Di Salle F
    "Comparison between realistic and spherical approaches in EEG forward modelling," Biomed Tech (Berl), 55(3):133-46

14. Pegado F, Bekinschtein T, Chausson N, Dehaene S, Cohen L, Naccache L
    "Probing the lifetimes of auditory novelty detection processes," Neuropsychologia, 48(10):3145-54.

15. Poch C, Campo P, Parmentier FB, Ruiz-Vargas JM, Elsley JV, Castellanos NP, Maestú F, del Pozo F
    "Explicit processing of verbal and spatial features during letter-location binding modulates oscillatory activity of a fronto-parietal network", Neuropsychologia, 48(13):3846-54

16. Robitaille N, Marois R, Todd J, Grimault S, Cheyne D, Jolicœur P
    "Distinguishing between lateralized and nonlateralized brain activity associated with visual short-term memory: fMRI, MEG, and EEG evidence from the same observers," Neuroimage, 53(4): 1334-1345

17. Tzelepi A, Laskaris N, Amditis A, Kapoula Z
    "Cortical activity preceding vertical saccades: A MEG study," Brain Res, 1321:105-16

18. Vatta F, Meneghini F, Esposito F, Mininel S, Di Salle F
    "Realistic and spherical head modeling for EEG Forward Problem Solution: A Comparative Cortex-Based Analysis," Comput Intell Neurosci, 2010:972060

19. Vecchiato G, Astolfi L, Cincotti F, De Vico Fallani F, Sorrentino DM, Mattia D, Salinari S, Bianchi L, Toppi J, Aloise F, Babiloni F
    "Patterns of cortical activity during the observation of Public Service Announcements and commercial advertisings," Nonlinear Biomed Phys, 4 Suppl 1:S3

2009

1. Amor F, Baillet S, Navarro V, Adam C, Martinerie J, Quyen MLV
   "Cortical local and long-range synchronization interplay in human absence seizure initiation," Neuroimage, 45(3):950-96

2. Attal Y, Bhattacharjee M, Yelnik J, Cottereau B, Lefèvre J, Okada Y, Bardinet E, Chupin M, Baillet S
   "Modelling and detecting deep brain activity with MEG and EEG," IRBM, 30(3):133-138

3. Bekinschtein T, Dehaene S, Rohaut B, Tadel F, Cohen L, Naccache L
   "Neural signature of the conscious processing of auditory regularities," PNAS, 106(5):1672-1677.

4. Bristow D, Dehaene-Lambertz G, Mattout J, Soares C, Gliga T, Baillet S, Mangin JF
   "Hearing faces: how the infant brain matches the face it sees with the speech it hears," J Cogn Neurosci, 21(5):905-21

5. Carota F, Posada A, Harquel S, Delpuech C, Bertrand O, Sirigu A
   "Neural Dynamics of the Intention to Speak," Cereb Cortex, 20(8):1891-7

6. Chaumon M, Hasboun D, Baulac M, Adam C, Tallon-Baudry C
   "Unconscious contextual memory affects early responses in the anterior temporal lobe," Brain Res,1285:77-87

7. Dalal SS, Baillet S, Adam C, Ducorps A, Schwartz D, Jerbi K, Bertrand O, Garnero L, Martinerie J, Lachaux JP
   "Simultaneous MEG and intracranial EEG recordings during attentive reading," Neuroimage, 45(4):1289-304

8. Darvas F, Ojemann JG, Sorensen LB
   "Bi-phase locking - a tool for probing non-linear interaction in the human brain," Neuroimage, 46(1):123-32

9. Daunizeau J, Kiebel SJ, Friston KJ
   "Dynamic causal modelling of distributed electromagnetic responses", Neuroimage, 47(2):590-601

10. Henson RN, Mattout J, Phillips C, Friston KJ
    "Selecting forward models for MEG source-reconstruction using model-evidence," Neuroimage, 46(1):168–176

11. Henson R, Mouchlianitis E, Friston KJ
    "MEG and EEG data fusion: Simultaneous localisation of face-evoked responses," Neuroimage, 47(2):581–589

12. Khemakhem R, Zouch W, Ben Hamida A, Taleb-Ahmed A, Feki L
    "EEG Source Localization Using the Inverse Problem Methods", IJCSNS, 9(4):408-415

13. Liang WK, Wang MS
    "Source reconstruction of brain electromagnetic fields--source iteration of minimum norm (SIMN)," Neuroimage, 47(4):1301-11

14. MacLeod RS, Stinstra JG, Lew S, Whitaker RT, Swenson DJ, Cole MJ, Krüger J, Brooks DH, Johnson CR
    "Subject-specific, multiscale simulation of electrophysiology: a software pipeline for image-based models and application examples", Philos Transact A Math Phys Eng Sci, 367(1896):2293-310

15. Moratti S, Keil A
    "Not What You Expect: Experience but not Expectancy Predicts Conditioned Responses in Human Visual and Supplementary Cortex," Cereb Cortex, 19(12):2803-9

16. Robitaille N, Grimault S, Jolicœur P
    "Bilateral parietal and contralateral responses during maintenance of unilaterally encoded objects in visual short-term memory: Evidence from magnetoencephalography," Psychophysiology, 46(5):1090-1099

17. Rosanova M, Casali A, Bellina V, Resta F, Mariotti M, Massimini M
    "Natural frequencies of human corticothalamic circuits," J Neurosci, 29(24):7679-85

18. Rudrauf D, Lachaux JP, Damasio A, Baillet S, Hugueville L, Martinerie J, Damasio H, Renault B
    "Enter feelings: somatosensory responses following early stages of visual induction of emotion," Int J Psychophysiol, 72(1):13-23

2008

1. Ammari H, "An Introduction to Mathematics of Emerging Biomedical Imaging," Mathématiques et Applications, Vol. 62

2. Bucolo M, Di Grazia F, Fortuna L, Frasca M, Sapuppo F
   "An environment for complex behaviour detection in bio-potential experiments", Math Biosci Eng, 5(2):261-76

3. George N, Conty L
   "Facing the gaze of others," Neurophysiol Clin, 38(3):197-207

4. Grova C, Daunizeau J, Kobayashi E, Bagshaw AP, Lina JM, Dubeau F, Gotman J
   "Concordance between distributed EEG source localization and simultaneous EEG-fMRI studies of epileptic spikes," Neuroimage, 39(2):755-774

5. Izard V, Dehaene-Lambertz G, Dehaene S
   "Distinct cerebral pathways for object identity and number in human infants," PLoS Biol, 6(2):e11

6. Rudrauf D, David O, Lachaux JP, Kovach CK, Martinerie J, Renault B, Damasio A
   "Rapid Interactions between the Ventral Visual Stream and Emotion-Related Structures Rely on a Two-Pathway Architecture," J Neurosci, 28(11):2793-2803

7. Senot P, Baillet S, Renault B, Berthoz A
   "Cortical dynamics of anticipatory mechanisms in interception: a neuromagnetic study," J Cogn Neurosci, 20(10):1827-38

8. Spyrou L, Sanei S
   "Source localization of event-related potentials incorporating spatial notch filters," IEEE Trans Biomed Eng, 55(9):2232-9

9. Stoitsis J, Giannakakis GA, Papageorgiou C, Nikita KS, Rabavilas A, Anagnostopoulos D, "Evidence of a posterior cingulate involvement (Brodmann area 31) in dyslexia: a study based on source localization algorithm of event-related potentials," Prog Neuropsychopharmacol Biol Psychiatry, 32(3):733-8

10. Van Gaal S, Ridderinkhof R, Fahrenfort JF, Scholte HS, Lamme VAF
    "Frontal Cortex Mediates Unconsciously Triggered Inhibitory Control," J Neurosci, 28(32):8053-8062

2007

1. Attal Y, Bhattacharjee M, Yelnik J, Cottereau B, Lefèvre J, Okada Y, Bardinet E, Chupin M, Baillet S
   "Modeling and detecting deep brain activity with MEG & EEG," Conf Proc IEEE Eng Med Biol Soc, 2007:4937-40.

2. Conty L, N'Diaye K, Tijus C, George N
   "When eye creates the contact! ERP evidence for early dissociation between direct and averted gaze motion processing," Neuropsychologia, 45:3024-3037

3. Cottereau B, Jerbi K, Baillet S
   "Multiresolution imaging of MEG cortical sources using an explicit piecewise model," Neuroimage, 38(3):439-51

4. Del Cul A, Baillet S, Dehaene S
   "Brain dynamics underlying the nonlinear threshold for access to consciousnes," PLoS Biology, 5(10):e260

5. Dossevi A, Garnero L, Ammari H
   "Geodesic and functional K-means algorithms. A bounding and multistart procedure to recover functional networks from MEG/EEG recordings," IJBEM, 9(4):223-32

6. Gramfort A, Cottereau B, Clerc M, Thirion B, Baillet S
   "Challenging the estimation of cortical activity from MEG with simulated fMRI-constrained retinotopic maps," Conf Proc IEEE Eng Med Biol Soc, 2007:4945-8

7. Henson RN, Mattout J, Singh KD, Barnes GR, Hillebrand A, Friston K
   "Population-level inferences for distributed MEG source localization under multiple constraints: Application to face-evoked fields," Neuroimage, 38(3):422-438

8. Jerbi K, Lachaux JP, N'Diaye K, Pantazis D, Leahy RM, Garnero L, Baillet S
   "Coherent neural representation of hand speed in humans revealed by MEG imaging," PNAS, 104(18):7676-7681

9. Stenroos M, Mantynen V, Nenonen J
   "A Matlab library for solving quasi-static volume conduction problems using the boundary element method", Comput Methods Programs Biomed, 88(3):256-63

10. Nara T, Oohama J, Hashimoto M, Takeda T, Ando S
    "Direct reconstruction algorithm of current dipoles for vector magnetoencephalography and electroencephalography," Phys Med Biol, 52(13):3859-79

11. Weisend MP, Hanlon FM, Montano R, Ahlfors SP, Leuthold AC, Pantazis D, Mosher JC, Georgopoulos AP, Hamalainen MS, Aine CJ
    "Paving the Way for Cross-site Pooling of Magnetoencephalography (MEG) Data," International Congress Series, 1300:615--618

2006

1. Daunizeau J, Mattout J, Clonda D, Goulard B, Benali H, Lina, JM
   "Bayesian spatio-temporal approach for EEG source reconstruction: conciliating ECD and distributed models", IEEE Transactions on Biomedical Engineering, 53(3):503-516

2. David O, Kiebel SJ, Harrison LM, Mattout J, Kilner JM, Friston KJ
   "Dynamic causal modeling of evoked responses in EEG and MEG," Neuroimage, 30(4):1255-72

3. Friston K, Henson K, Phillips C, Mattout J
   "Bayesian Estimation of Evoked and Induced Responses," Hum Brain Mapp, 27(9):722–735

4. Grova C, Daunizeau J, Lina JM
   "Evaluation of EEG localization methods using realistic simulations of interictal spikes", Neuroimage, 29(3):734-753

5. Le Van Quyen M, Amor F, Rudrauf D
   "Exploring the dynamics of collective synchronizations in large ensembles of brain signals," J Physiol Paris, 100(4):194-200

2005

• Sergent C, Baillet S, Dehaene S
  "Timing of the brain events underlying access to consciousness during the attentional blink," Nat Neurosci, 8(10):1391-1400

• Amor F, Rudrauf D, Navarro V
  "Imaging brain synchrony at high spatio-temporal resolution: application to MEG signals during absence seizures," Signal Processing, 85(11):2101-11

• N'diaye K, Pfeuty M, Ragot R
  "Parsing the temporal evolution of brain activity in duration discrimination with electro- and magneto-encephalography," J Cog Neurosci, 46-46 Suppl. S 2005

2004

• N'Diaye K, Ragot R, Garnero L
  "What is common to brain activity evoked by the perception of visual and auditory filled durations? A study with MEG and EEG co-recordings," Cogn Brain Res, 21(2):250-268

Publications on Brainstorm's code

2011

• Tadel F, Baillet S, Mosher JC, Pantazis D, Leahy RM (2011)
  "Brainstorm: A user friendly application for MEG/EEG analysis," Comput Intell Neurosci, vol. 2011, Article ID 879716, 13 pages, 2011. doi:10.1155/2011/879716 [ html, pdf ]

2000-2010

• Hamalainen MS, Lin FH, Mosher JC (2010)
  “Anatomically and functionally constrained minimum-norm estimates,” in MEG: An Introduction to Methods, Hansen PC, Kringelbach ML, Salmelin R, Eds. Oxford: Oxford University Press.

• Lefèvre J, Baillet S (2009)
  "Optical flow approaches to the identification of brain dynamics", Hum Brain Mapp, 30(6):1887-1897

• Soto JLP, Pantazis D, Jerbi K, Lachaux JP, Garnero L, Leahy RM (2009)
  "Detection of Event-Related Modulations of Oscillatory Brain Activity with Multivariate Statistical Analysis of MEG Data," Hum Brain Mapp, 30(6):1922-1934

• Pantazis D, Nichols TE, Baillet S, Leahy RM (2005)
  "A Comparison of Random Field Theory and Permutation Methods for the Statistical Analysis of MEG data", Neuroimage, 25(2):355-68

• Darvas F, Rautiainen M, Pantazis D, Benali H, Baillet S, Mosher JC, Garnero L, Leahy RM (2005)
  "Investigations of dipole localization accuracy in MEG using the bootstrap", Neuroimage, 25(2):383-394

• Jerbi K, Baillet S, Mosher JC, Nolte G, Garnero L, Leahy RM (2004)
  “Localization of Realistic Cortical Activity in MEG using Current Multipoles,” Neuroimage, 22(2):779-93

• Ossadtchi A, Baillet A, Mosher JC, Thyerlei D, Sutherling W, Leahy RM (2004)
  "Automated Interictal Spike Detection and Source Localization in MEG using ICA and Spatio-Temporal Clustering," Clinic Neurophy, 115(3):508-22

• Pantazis D, Nichols TS, Baillet S, Leahy RM (2003)
  "Spatiotemporal Localization of Significant Activation in MEG using Permutation Tests," Inf Process Med Imaging, 18:512-23

• Jerbi K, Mosher JC, Baillet S, Leahy RM (2002)
  "On MEG Forward Modelling using Multipolar Expansions," Phys Med Biol, 47(4):523-55

• Baillet S, Mosher JC, Leahy RM (2001)
  "Electromagnetic Brain Mapping," IEEE Signal Processing Magazine, 18(6):14-30 pdf

• Ermer JJ, Mosher JC, Baillet S, Leahy RM (2001)
  "Rapidly recomputable EEG forward models for realistic head shapes," Phys Med Biol, 46(4):1265-1281 pdf

• Ermer JJ, Mosher JC, Huang MX, Leahy RM (2000)
  "Paired MEG data set source localization using recursively applied and projected (RAP) MUSIC," IEEE Trans Biomed Eng, 47(9):1248-60 pdf

• Mosher JC, Baillet S, Jerbi K, Leahy RM (2000)
  "MEG multipolar modeling of distributed sources using RAP-MUSIC," Signals, Systems and Computers 2000, Conference Record of the Thirty-Fourth Asilomar Conference, 1:318-322 pdf

1990-2000

• Mosher JC, Baillet S, Leahy RM (1999)
  "EEG Source Localization and Imaging Using Multiple Signal Classification Approaches," J Clin Neurophysiol, 16(3):225-38

• Mosher JC, Leahy RM, Shattuck DW, Baillet S (1999)
  "MEG Source Imaging using Multipolar Expansions," In 16th Conference on Information Processing in Medical Imaging, LCNS, pp. 15–28pdf

• Mosher JC, Leahy RM, Lewis PS (1999)
  "EEG and MEG: forward solutions for inverse methods," IEEE Trans Biomed Eng, 46(3):245-59 pdf

• Mosher JC, Leahy RM (1999)
  "Source localization using recursively applied and projected (RAP) MUSIC," IEEE Trans Biomed Eng, 47(9):1248-60 pdf

• Huang MX, Mosher JC, Leahy RM (1999)
  "A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG," Phys Med Biol, 44:423-440 pdf

• Mosher JC, Leahy RM (1998)
  "Recursive MUSIC: A framework for EEG and MEG source localization," IEEE Trans Biomed Eng, 45(11):1342 -54 pdf

• Leahy RM, Mosher JC, Spencer ME, Huang MX, Lewine JD (1998)
  "A study of dipole localization accuracy for MEG and EEG using a human skull phantom. Electroencephalography," Clin Neurophysiol, 107(2):159-73 pdf

• Mosher JC, Leahy RM, Huang MX, Spencer ME (1997)
  "Modeling versus Accuracy in EEG and MEG data," NFSI '97 in Biomedizinische Technik, 42(1):5-8 pdf

• Phillips JW, Leahy RM, Mosher JC, Timsari B (1997)
  "Imaging neural activity using MEG and EEG," IEEE Eng Med Biol Mag, 16(3):34-42 pdf

• Phillips JW, Leahy RM, Mosher JC (1997)
  "MEG-based imaging of focal neuronal current sources," IEEE Trans Med Imaging, 16(3):338-48pdf

• Phillips JW, Leahy RM, Mosher JC (1996)
  "Dynamic Bayesian imaging using the magnetoencephalogram," Engineering in Medicine and Biology Society, 18th Annual International Conference of the IEEE, 2: 817-18pdf

• Phillips J, Leahy RM, Mosher JC (1996)
  "Dynamic MEG Imaging of Focal Neuronal Sources," Proc IEEE Nucl Sci Symp and Medical Imag Conf, 1928-32. pdf

• Mosher JC, Leahy RM, Lewis PS (1995)
  "Matrix kernels for MEG and EEG source localization and imaging," Acoustics, Speech, and Signal Processing, ICASSP-95, 5:2943-6pdf

• Lewis PS, Mosher JC, Leahy RM (1995)
  "Neuromagnetic source reconstruction," Acoustics, Speech, and Signal Processing, ICASSP-95, 5:2911-4pdf

• Mosher JC, Leahy RM, Lewis PS (1993)
  "Biomagnetic localization from transient quasi-static events," Acoustics, Speech, and Signal Processing, ICASSP-93, 1:91-4 pdf

• Mosher JC, Leahy RM, Lewis P (1992)
  "Multiple dipole modeling and localization from spatiotemporal MEG data," IEEE Trans Biomed Eng, 541-57 pdf

• Mosher JC, Spencer ME, Leahy RM, Lewis PS (1992)
  "Error bounds for MEG and EEG source localization," Signals, Systems and Computers, 1992, Conference Record of The Twenty-Sixth Asilomar Conference, 150-5 pdf

Other

• Brainstorm has been cited as one of the 50 successful open-source projects that are changing medicine [#22] (2011) link.

• Computer world: Open source medicine puts health above profits (2012). Link

References

Useful, mostly technical, background reading:

[1] S Baillet, JC Mosher, and RM Leahy, "Electromagnetic brain mapping," IEEE Signal processing magazine, vol. 18, pp. 14-30, 2001.

[2] M Huang, J Mosher, and R Leahy, "A sensor-weighted overlapping-sphere head model and exhaustive head model comparison for MEG," Phys. Med. Biol., vol. 44, no. 2, pp. 423–440, 1999.

[3] F Darvas, JJ Ermer, JC Mosher, and Leahy RM, "Generic head models for atlas-based EEG source analysis," Human Brain Mapping, vol. 27, no. 2, pp. 129-143, 2006.

[4] JC Mosher, RM Leahy and P Lewis , "Multiple dipole modeling and localization from spatiotemporal MEG data, "IEEE Trans. Biomed. Eng., vol. 39, no. 5, pp. 541-557, June 1992.

[5] JW Phillips, RM Leahy, JC Mosher, "MEG-based imaging of focal neuronal current sources," IEEE Transactions on Medical Imaging, vol. 16, no. 3, pp. 338-348, June 1997.

[6] S Baillet and L Garnero, "A Bayesian approach to introducing anatomo-functional priors in the EEG /MEG inverse problem," IEEE Trans. Biomed. Eng., vol. 44, pp. 374-385, 1997.

[7] D Schmidt, J George and C Wood, "Bayesian inference applied to the electromagnetic inverse problem," Human Brain Mapping, vol. 7, pp. 195-212, 1999.

[8] GL Barkley and C Baumgartner, "MEG and EEG in epilepsy," Journal of Clinical Neurophysiology, vol. 20, no. 3, p. 163, 2003.

[9] A Arieli, A Sterkin, A Grinvald, and A Aertsen, "Dynamics of ongoing activity: explanation of the large variability in evoked cortical responses," Science, vol. 273, no. 5283, p. 1868, 1996.

[10] C Tallon-Baudry and O Bertrand, "Oscillatory gamma activity in humans and its role in object representation," Trends Cogn Sci, vol. 3, no. 4, pp. 151-162, 1999.

[11] G Pfurtscheller and FH Lopes da Silva, "Event-related EEG/MEG synchronization and desynchronization: basic principles," Clinical Neurophysiology, vol. 110, no. 11, pp. 1842-1857, 1999.

[12] P Tass, MG Rosenblum, J Weule, J Kurths, A Pikovsky, J Volkmann, A Schnitzler, and HJ Freund, "Detection of n: m phase locking from noisy data: application to magnetoencephalography," Physical Review Letters, vol. 81, no. 15, pp. 3291-3294, 1998.

[13] CWJ Granger, BN Huangb, and CW Yang, "A bivariate causality between stock prices and exchange rates: evidence from recent Asianflu," Quarterly Review of Economics and Finance, vol. 40, no. 3, pp. 337-354, 2000.

[14] W Hesse, E Moller, M Arnold, and B Schack, "The use of time-variant EEG Granger causality for inspecting directed interdependencies of neural assemblies," Journal of Neuroscience Methods, vol. 124, no. 1, pp. 27-44, 2003.

[15] HB Hui, D Pantazis, SL Bressler, and RM Leahy, "Identifying true cortical interactions in MEG using the nulling beamformer," NeuroImage, 2009.

[16] JLP Soto, D Pantazis, K Jerbi, JP Lachaux, S Baillet, and RM Leahy, "Canonical Correlation Analysis Applied to Functional Connectivity in MEG," IEEE International Symposium on Biomedical Imaging (ISBI), April 2010.

[17] D Pantazis, TE Nichols, S Baillet, and RM Leahy, "A Comparison of Random Field Theory and Permutation Methods for the Statistical Analysis of MEG data," Neuroimage, vol. 25, pp. 355-368, April 2005.

[18] S Baillet, JC Mosher, and RM Leahy, "Brainstorm beta release: a Matlab software package for MEG signal processing and source localization and visualization," Neuroimage, vol. 11, p. 915, 2000.

[19] JC Mosher, S Baillet, F Darvas, D Pantazis, E Kucukaltun-Yildirim, and RM Leahy, "Brainstorm Electromagnetic Imaging Software," IJBEM, vol. 7, no. 2, pp. 189-190, 2005.

[20] A Tzelepi, N Laskaris, A Amditis, and Z Kapoula, "Cortical activity preceding vertical saccades: A MEG study," Brain Research, 2010.

[21] F Amor, S Baillet, V Navarro, C Adam, J Martinerie, and MLV Quyen, "Cortical local and long-range synchronization interplay in human absence seizure initiation," Neuroimage, vol. 45, no. 3, pp. 950-962, April 2009.

[22] T Bekinschtein, S Dehaene, B Rohaut, F Tadel, L Cohen, and L Naccache, "Neural signature of the conscious processing of auditory regularities," PNAS, vol. 106, pp. 1672-1677, February 2009.

[23] F Carota, A Posada, S Harquel, C Delpuech, O Bertrand, and A Sirigu, "Neural Dynamics of the Intention to Speak," Cerebral Cortex, 2009.

[24] M Chaumon, D Hasboun, M Baulac, C Adam, and C Tallon-Baudry, "Unconscious contextual memory affects early responses in the anterior temporal lobe," Brain research, 2009.

[25] S Moratti and A Keil, "Not What You Expect: Experience but not Expectancy Predicts Conditioned Responses in Human Visual and Supplementary Cortex," Cerebral Cortex, 2009.

[26] D Pantazis, GV Simpson, DL Weber, CL Dale, TE Nichols, and RM Leahy, "A novel ANCOVA design for analysis of MEG data with application to a visual attention study," Neuroimage, vol. 44, no. 1, pp. 164–174, 2009.

[27] P Hansen, M Kringelbach, and R Salmelin (eds.), Meg: An Introduction to Methods.: Oxford University Press, 2010.

[28] R Salmelin and S Baillet, "Electromagnetic brain imaging," Human Brain Mapping, vol. 30, pp. 1753-1757, 2009.

[29] The MoinMoin Wiki Engine, http://moinmo.in/

[30] vBulletin, http://www.vbulletin.com/

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[32] Y Cointepas, Manginm JF, L Garnero, JB Poline, and H Benali, "BrainVISA: Software platform for visualization and analysis of multi-modality brain data," Neuroimage, vol. 13, no. 6, p. S98, 2001, http://brainvisa.free.fr.

[33] FreeSurfer, http://surfer.nmr.mgh.harvard.edu/

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[36] MS Hämäläinen. MNE software. http://www.nmr.mgh.harvard.edu/martinos/userInfo/data/sofMNE.php

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[38] RM Leahy, JC Mosher, ME Spencer, MX Huang, and JD Lewine, "A study of dipole localization accuracy for MEG and EEG using a human skull phantom," Electroencephalography and clinical neurophysiology, vol. 107, no. 2, pp. 159-173, 1998.

[39] F Darvas, D Pantazis, E Kucukaltun-Yildirim, and RM Leahy, "Mapping human brain function with MEG and EEG: methods and validation," NeuroImage, vol. 23, pp. 289-299, 2004.

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[41] A Gramfort, T Papadopoulo, E Olivi, and M Clerc, "OpenMEEG: Open-source software for quasistatic bioelectromagnetics," 2010, http://openmeeg.gforge.inria.fr.

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[49] MS Worden, JJ Foxe, N Wang, and GV Simpson, "Anticipatory biasing of visuospatial attention indexed by retinotopically specific alpha-band electroencephalography increases over occipital cortex," Journal of Neuroscience, vol. 20, no. 6, p. 63, 2000.

[50] W Klimesch, M Doppelmayr, T Pachinger, and B Ripper, "Brain oscillations and human memory: EEG correlates in the upper alpha and theta band," Neuroscience letters, vol. 238, no. 1-2, pp. 9-12, 1997.

[51] O Jensen and CD Tesche, "Frontal theta activity in humans increases with memory load in a working memory task," European Journal of Neuroscience, vol. 15, no. 8, pp. 1395-1399, 2002.

[52] W Klimesch, M Doppelmayr, H Russegger, T Pachinger, and J Schwaiger, "Induced alpha band power changes in the human EEG and attention," Neuroscience Letters, vol. 244, no. 2, pp. 73-76, 1998.

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[55] WD Penny, AP Holmes, and KJ Friston, "Random effects analysis," Human brain function, vol. 2, pp. 843-850, 2004.

[56] D Pantazis and RM Leahy, Meg: An Introduction to Methods; Chapter 10: Statistical Inference in MEG Distributed Source Imaging.: Oxford Univ Pr, 2010.

[57] JA Mumford and T Nichols, "Modeling and inference of multisubject fMRI data," IEEE Engineering in Medicine and Biology Magazine, pp. 42–51, March/April 2006.

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[60] DJ Kroon, "Iterative Closest Point using finite difference optimization to register 3D point clouds affine," Available for download at http://www.mathworks.com/matlabcentral/fileexchange/24301-finite-iterative-closest-point.

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[63] JLP Soto, D Pantazis, K Jerbi, JP Lachaux, L Garnero, and RM Leahy, "Detection of Event-Related Modulations of Oscillatory Brain Activity with Multivariate Statistical Analysis of MEG Data," Human Brain Mapping, vol. 30, pp. 1922-1934, 2009.

[64] J Lefèvre and S Baillet, "Optical flow approaches to the identification of brain dynamics," Human Brain Mapping, vol. 30, pp. 1887-1897, 2009.

[65] SPM, http://www.fil.ion.ucl.ac.uk/spm/