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| Download the latest version of BrainSuite ('''BrainSuite23a''') from http://forums.brainsuite.org/download/. * You need to register yourself first there in order to go to the download page.<<BR>><<BR>> {{attachment:bst_login.png||width=400}} * After account creation, log in and choose the binary depending on your Operating System (OS).<<BR>><<BR>> {{attachment:bst_download.png||width=500}} |
Download the latest version of BrainSuite ('''BrainSuite23a''') from http://forums.brainsuite.org/download/. * You need to register yourself first there in order to go to the download page.<<BR>><<BR>> {{attachment:bst_login.png||width="400"}} * After account creation, log in and choose the binary depending on your Operating System (OS).<<BR>><<BR>> {{attachment:bst_download.png||width="500"}} |
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| * '''BrainSuite23a_win64.exe''' (for Windows) | * '''BrainSuite23a_win64.exe''' (for Windows) |
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| BrainSuite23a depends on '''MCR 2023a (9.14)''' which can be downloaded and installed following the steps mentioned in [[https://www.mathworks.com/products/compiler/matlab-runtime.html]] | BrainSuite23a depends on '''MCR 2023a (9.14)''' which can be downloaded and installed following the steps mentioned in https://www.mathworks.com/products/compiler/matlab-runtime.html |
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| == Testing == <TODO> |
BrainSuite for Brainstorm
Authors: Chinmay Chinara, Anand Joshi, Raymundo Cassani, Takfarinas Medani, David Shattuck
BrainSuite software is a collection of image analysis tools designed to process magnetic resonance images (MRI) of the human brain. BrainSuite provides an automatic sequence to extract cortical surface mesh models from the MRI, tools to register these to a labeled atlas to define anatomical regions of interest, and tools for processing diffusion imaging data including co-registration to anatomical data, ODF and tensor fitting and tractography. BrainSuite also contains visualization tools for exploring these data, and can produce interactive maps of regional connectivity. For more details please visit https://brainsuite.org/.
Contents
Background
Currently BrainSuite is used within Brainstorm to perform the following:
T1-MRI Segmentation to extract segmented brain surfaces from a T1-weighted MRI image.
Skull stripping for removing extracranial regions in CT for sEEG contact localization.
Downloading BrainSuite
Download the latest version of BrainSuite (BrainSuite23a) from http://forums.brainsuite.org/download/.
You need to register yourself first there in order to go to the download page.
After account creation, log in and choose the binary depending on your Operating System (OS).
- Depending on the OS, the downloaded binary could be:
BrainSuite23a_win64.exe (for Windows)
BrainSuite23a.dmg (for Mac)
BrainSuite23a.linux.tgz (for Linux)
Installing MATLAB Compile Runtime (MCR)
BrainSuite23a depends on MCR 2023a (9.14) which can be downloaded and installed following the steps mentioned in https://www.mathworks.com/products/compiler/matlab-runtime.html
Installing BrainSuite
Depending on the OS, the BrainSuite installation can be a bit different for each.
For Windows
<TODO>
For Mac
<TODO>
For Linux
<TODO>
Linking BrainSuite with Brainstorm
<TODO>
Testing
<TODO>
Troubleshooting
<TODO> Link to forums and general troubleshooting