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| == Important notes == * In all the tutorials, we will consider that you are working with the source distribution of Brainstorm, as it is the recommanded way to use this toolbox. * If you are working with compiled binaries, some menus might be missing, but everything else should work the same way. * Before starting using Brainstorm with your own data, you should go through all the tutorials. * If you want a printed version of this documentation: open a tutorial, go to the menu on top of the page, select ''More actions > Print view'', print the page, click on the ''Back ''button of your browser, and go to next tutorial. |
== How to use those tutorials == 1. Go through all the tutorials in the section ''Getting started with Brainstorm''. In just a few hours, they will introduce you to most of the main features of the application. 1. Then read more specific tutorials, closer to your personal interests. 1. If you want a printed version of a page, click on the "print" link on the top right of the page. |
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| == Starting with Brainstorm == Intro: [[BstFolders|Introduction to Brainstorm structure]] |
== Getting started with Brainstorm == * [[Tutorials/BstFolders|0. Brainstorm architecture]] * [[Tutorials/TutFirstSteps|1. First steps]] * [[Tutorials/TutImportAnatomy|2. Importing individual anatomy]] * [[Tutorials/TutImportRecordings|3. Importing recordings]] * [[Tutorials/TutExploreRecodings|4. Exploring the recordings]] * [[Tutorials/TutHeadModel|5. Computing a head model]] * [[Tutorials/TutNoiseCov|6. Computing a noise covariance matrix]] * [[Tutorials/TutSourceEstimation|7. Source estimation]] * [[Tutorials/TutScouts|8. Scouts: cortical regions of interest]] * [[Tutorials/TutProcesses|9. Processes: Graphical batching interface]] * [[Tutorials/TutStat|10. Statistics]] * [[Tutorials/TutTimefreq|11. Time-frequency]] |
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| 1. [[Tutorials/TutFirstSteps|First steps]] 1. [[Tutorials/TutImportAnatomy|Importing individual anatomy]] 1. [[Tutorials/TutImportRecordings|Importing recordings]] 1. [[Tutorials/TutExploreRecodings|Exploring the recordings]] 1. [[Tutorials/TutHeadModel|Computing a head model]] 1. [[Tutorials/TutNoiseCov|Computing a noise covariance matrix]] 1. [[Tutorials/TutSourceEstimation|Source estimation]] 1. [[Tutorials/TutScouts|Scouts: cortical regions of interest]] 1. [[Tutorials/TutProcesses|Processes: Graphical batching interface]] |
== Advanced tutorials == === Anatomy and registration === 1. [[CoordinateSystems|Brainstorm coordinate systems]] 1. [[Tutorials/SegBrainVisa|Extract head and cortex surface with BrainVISA]] 1. [[Tutorials/SegBrainVisa|Extract head and cortex surface with BrainSuite]] 1. [[Tutorials/TutRefineReg|Refine registration using head points]] 1. [[Tutorials/TutWarping|Warping default anatomy]] |
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| == Other useful tutorials == 1. [[CiteBrainstorm|Cite Brainstorm in your publications]] |
=== Recordings === 1. [[Tutorials/TutRawViewer|Review raw recordings and edit markers]] 1. [[Tutorials/TutMindNeuromag|Import and process Neuromag raw recordings]] === Source estimation === 1. [[Tutorials/TutBem|BEM head model]] 1. [[Tutorials/TutInverseExpertMode|More inverse methods]] 1. [[Tutorials/TutVolSource|Volume source estimation]] 1. [[Tutorials/TutProject|Project sources on default anatomy]] 1. [[Tutorials/TutXfit|Import and visualize dipoles from Neuromag Xfit]] === Other useful how-to's === 1. [[Tutorials/TutScript|How to use Brainstorm without the GUI]] 1. [[CiteBrainstorm|How to cite Brainstorm in your publications]] 1. [[Tutorials/TutCompile|How to compile Brainstorm]] 1. [[Tutorials/TutUserProcess|How to write your own processes]] 1. [[Tutorials/KnownBugs|Known bugs]] |
Tutorials
How to use those tutorials
Go through all the tutorials in the section Getting started with Brainstorm. In just a few hours, they will introduce you to most of the main features of the application.
- Then read more specific tutorials, closer to your personal interests.
- If you want a printed version of a page, click on the "print" link on the top right of the page.
Getting started with Brainstorm
?0. Brainstorm architecture
?1. First steps
?2. Importing individual anatomy
?3. Importing recordings
?4. Exploring the recordings
?5. Computing a head model
?6. Computing a noise covariance matrix
?7. Source estimation
?8. Scouts: cortical regions of interest
?9. Processes: Graphical batching interface
?10. Statistics
?11. Time-frequency
Advanced tutorials
Anatomy and registration
?Refine registration using head points
Recordings
?Review raw recordings and edit markers
Source estimation
?More inverse methods
?Project sources on default anatomy
?Import and visualize dipoles from Neuromag Xfit