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| == Important notes == * Before starting using Brainstorm with your own data: * You should go through '''__all the tutorials__''' in the following section: "''Getting started with Brainstorm''". In just a few hours, they will introduce you to most of the main features of the application. * Then you can read more specific tutorials, closer to your personal interests. * If you want a printed version of this documentation: * Open a tutorial, go to the menu on top of the page, * Select ''More actions > Print view'', print the page, and go to the next tutorial. |
== How to use those tutorials == 1. Go through all the tutorials in the section ''Getting started with Brainstorm''. In just a few hours, they will introduce you to most of the main features of the application. 1. Then read more specific tutorials, closer to your personal interests. 1. If you want a printed version of a page, click on the "print" link on the top right of the page. |
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| Step by step tutorials * [[Tutorials/BstFolders|0. Introduction to Brainstorm structure]] |
* [[Tutorials/BstFolders|0. Brainstorm architecture]] |
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| == Other useful tutorials == 1. [[CoordinateSystems|Brainstorm coordinates systems]] |
== Advanced tutorials == === Anatomy and registration === 1. [[CoordinateSystems|Brainstorm coordinate systems]] 1. [[Tutorials/SegBrainVisa|Extract head and cortex surface with BrainVISA]] 1. [[Tutorials/SegBrainVisa|Extract head and cortex surface with BrainSuite]] 1. [[Tutorials/TutRefineReg|Refine registration using head points]] 1. [[Tutorials/TutWarping|Warping default anatomy]] === Recordings === |
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| 1. [[Tutorials/SegBrainVisa|Extract head and cortex surface with BrainVISA]] | === Source estimation === 1. [[Tutorials/TutBem|BEM head model]] |
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| 1. [[Tutorials/TutScript|Using Brainstorm without the GUI]] 1. [[CiteBrainstorm|Cite Brainstorm in your publications]] |
1. [[Tutorials/TutVolSource|Volume source estimation]] 1. [[Tutorials/TutProject|Project sources on default anatomy]] 1. [[Tutorials/TutXfit|Import and visualize dipoles from Neuromag Xfit]] === Other useful how-to's === 1. [[Tutorials/TutScript|How to use Brainstorm without the GUI]] 1. [[CiteBrainstorm|How to cite Brainstorm in your publications]] 1. [[Tutorials/TutCompile|How to compile Brainstorm]] 1. [[Tutorials/TutUserProcess|How to write your own processes]] 1. [[Tutorials/KnownBugs|Known bugs]] |
Tutorials
How to use those tutorials
Go through all the tutorials in the section Getting started with Brainstorm. In just a few hours, they will introduce you to most of the main features of the application.
- Then read more specific tutorials, closer to your personal interests.
- If you want a printed version of a page, click on the "print" link on the top right of the page.
Getting started with Brainstorm
?0. Brainstorm architecture
?1. First steps
?2. Importing individual anatomy
?3. Importing recordings
?4. Exploring the recordings
?5. Computing a head model
?6. Computing a noise covariance matrix
?7. Source estimation
?8. Scouts: cortical regions of interest
?9. Processes: Graphical batching interface
?10. Statistics
?11. Time-frequency
Advanced tutorials
Anatomy and registration
?Refine registration using head points
Recordings
?Review raw recordings and edit markers
Source estimation
?More inverse methods
?Project sources on default anatomy
?Import and visualize dipoles from Neuromag Xfit