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| * [[Tutorials/BstFolders|0. Introduction to Brainstorm structure]] | * [[Tutorials/BstFolders|0. Brainstorm architecture]] 1. [[http://neuroimage.usc.edu/brainstorm/Tutorials/BstFolders#Brainstorm_folders|Brainstorm folders]] 1. [[http://neuroimage.usc.edu/brainstorm/Tutorials/BstFolders#Brainstorm_database_.28concept.29|Brainstorm database (concept)]] 1. [[http://neuroimage.usc.edu/brainstorm/Tutorials/BstFolders#Brainstorm_database_.28files.29|Brainstorm database (files)]] |
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| * [[Tutorials/TutScouts|8. Scouts: cortical regions of interest]] | * [[Tutorials/TutScouts|8. Scouts: Cortical regions of interest]] |
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| == Anatomy and registration == 1. [[CoordinateSystems|Brainstorm coordinates systems]] 1. [[Tutorials/SegBrainVisa|Extract head and cortex surface with BrainVISA]] 1. [[TutWarping|Warping default anatomy]] |
== Advanced tutorials == === Anatomy and registration === 1. [[CoordinateSystems|Brainstorm coordinate systems]] 1. [[Tutorials/SegBrainVisa|MRI segmentation with BrainVISA]] 1. [[Tutorials/SegBrainVisa|MRI segmentation]][[Tutorials/SegBrainVisa|with BrainSuite]] 1. [[Tutorials/SegBrainVisa|MRI segmentation]][[Tutorials/SegBrainVisa|with FreeSurfer]] 1. [[Tutorials/TutRefineReg|Refine registration using head points]] 1. [[Tutorials/TutWarping|Warping default anatomy]] |
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| == Recordings == | === Recordings === |
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| 1. [[Tutorials/TutMindNeuromag|Import and process Neuromag raw recordings]] | 1. [[Tutorials/TutMindNeuromag|Neuromag raw recordings]] |
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| == Other useful tutorials == 1. [[Tutorials/TutInverseExpertMode|More inverse methods]] 1. [[Tutorials/TutScript|Using Brainstorm without the GUI]] 1. [[CiteBrainstorm|Cite Brainstorm in your publications]] |
=== Source estimation === 1. [[Tutorials/TutBem|BEM head model]] 1. [[Tutorials/TutVolSource|Volume source estimation]] 1. [[Tutorials/TutProject|Project sources on default anatomy]] 1. [[Tutorials/TutXfit|Import and visualize dipoles from Neuromag Xfit]] 1. [[Tutorials/TutClusters|Clusters of sensors]] === Other useful how-to's === 1. [[Tutorials/TutScript|How to use Brainstorm without the GUI]] 1. [[CiteBrainstorm|How to cite Brainstorm in your publications]] 1. [[Tutorials/TutCompile|How to compile Brainstorm]] 1. [[Tutorials/TutUserProcess|How to write your own processes]] 1. [[Tutorials/KnownBugs|Known bugs]] |
Tutorials
How to use those tutorials
Go through all the tutorials in the section Getting started with Brainstorm. In just a few hours, they will introduce you to most of the main features of the application.
- Then read more specific tutorials, closer to your personal interests.
- If you want a printed version of a page, click on the "print" link on the top right of the page.
Getting started with Brainstorm
?0. Brainstorm architecture
?1. First steps
?2. Importing individual anatomy
?3. Importing recordings
?4. Exploring the recordings
?5. Computing a head model
?6. Computing a noise covariance matrix
?7. Source estimation
?8. Scouts: Cortical regions of interest
?9. Processes: Graphical batching interface
?10. Statistics
?11. Time-frequency
Advanced tutorials
Anatomy and registration
?Refine registration using head points
Recordings
?Review raw recordings and edit markers
Source estimation