Differences between revisions 68 and 95 (spanning 27 versions)

Tutorials

How to use those tutorials

Go through all the tutorials in the section Getting started with Brainstorm. In just a few hours, they will introduce you to most of the main features of the application.
Then read more specific tutorials, closer to your personal interests.
If you want a printed version of a page, click on the "print" link on the top right of the page.

Getting started with Brainstorm

?0. Brainstorm architecture
?1. First steps
?2. Importing individual anatomy
1. Dataset description
2. Create protocol
3. Import MRI
4. Import surfaces
5. Downsample and merge surfaces
6. Check registration with MRI
7. Fix registration with MRI
8. What happened on the hard drive
?3. Importing recordings
?4. Exploring the recordings
?5. Computing a head model
?6. Computing a noise covariance matrix
?7. Source estimation
?8. Scouts: Cortical regions of interest
?9. Processes: Graphical batching interface
?10. Statistics
?11. Time-frequency

Advanced tutorials

Anatomy and registration

Recordings

?Review raw recordings and edit markers
Neuromag raw recordings

Source estimation

BEM head model
Volume source estimation
?Project sources on default anatomy
?Import and visualize dipoles from Neuromag Xfit
Clusters of sensors

Other useful how-to's

?How to use Brainstorm without the GUI
How to cite Brainstorm in your publications
?How to compile Brainstorm
How to write your own processes
Known bugs

-  ⇤ ← Revision 68 as of 2011-05-10 01:11:01 → 
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+   ← Revision 95 as of 2011-05-14 18:58:49 → ⇥
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-Deletions are marked like this.
+Additions are marked like this.
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- * [[Tutorials/BstFolders|0. Introduction to Brainstorm structure]]
+ * [[Tutorials/BstFolders|0. Brainstorm architecture]]
  * [[http://neuroimage.usc.edu/brainstorm/Tutorials/BstFolders#Brainstorm_folders|Brainstorm folders]]
  * [[http://neuroimage.usc.edu/brainstorm/Tutorials/BstFolders#Brainstorm_database_.28concept.29|Brainstorm database (concept)]]
  * [[http://neuroimage.usc.edu/brainstorm/Tutorials/BstFolders#Brainstorm_database_.28files.29|Brainstorm database (files)]]
-Line 10:
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+  * [[http://neuroimage.usc.edu/brainstorm/Tutorials/TutFirstSteps#Starting_Brainstorm_for_the_first_time|Starting Brainstorm for the first time]]

  * [[http://neuroimage.usc.edu/brainstorm/Tutorials/TutFirstSteps#Main_interface_window|Main interface window]]

  * [[http://neuroimage.usc.edu/brainstorm/Tutorials/TutFirstSteps#Create_first_protocol|Create first protocol]]

  * [[http://neuroimage.usc.edu/brainstorm/Tutorials/TutFirstSteps#Fiducials_selection_.28MRI_Viewer.29|Fiducials selection (MRI Viewer)]]

  * [[http://neuroimage.usc.edu/brainstorm/Tutorials/TutFirstSteps#Protocol_exploration|Protocol exploration]]

  * [[http://neuroimage.usc.edu/brainstorm/Tutorials/TutFirstSteps#MRI_visualization|MRI visualization]]

  * [[http://neuroimage.usc.edu/brainstorm/Tutorials/TutFirstSteps#Surfaces_visualization|Surfaces visualization]]

  * [[http://neuroimage.usc.edu/brainstorm/Tutorials/TutFirstSteps#Coordinates_tab|Coordinates tab]]
-Line 11:
+Line 30:
+. Dataset description
  1. Create protocol
  1. Import MRI
  1. Import surfaces
  1. Downsample and merge surfaces
  1. Check registration with MRI
  1. Fix registration with MRI
  1. What happened on the hard drive
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+Line 43:
- * [[Tutorials/TutScouts|8. Scouts: cortical regions of interest]]
+ * [[Tutorials/TutScouts|8. Scouts: Cortical regions of interest]]
-Line 21:
+Line 48:
-== Anatomy and registration ==
 1. [[CoordinateSystems|Brainstorm coordinates systems]]
 1. [[Tutorials/SegBrainVisa|Extract head and cortex surface with BrainVISA]]
 1. [[TutWarping|Warping default anatomy]]
+== Advanced tutorials ==
=== Anatomy and registration ===
 1. [[CoordinateSystems|Brainstorm coordinate systems]]
 1. [[Tutorials/SegBrainVisa|MRI segmentation with BrainVISA]]
 1. [[Tutorials/SegBrainVisa|MRI segmentation]][[Tutorials/SegBrainVisa|with BrainSuite]]
 1. [[Tutorials/SegBrainVisa|MRI segmentation]][[Tutorials/SegBrainVisa|with FreeSurfer]]
 1. [[Tutorials/TutRefineReg|Refine registration using head points]]
 1. [[Tutorials/TutWarping|Warping default anatomy]]
-Line 26:
+Line 57:
-== Recordings ==
+=== Recordings ===
-Line 28:
+Line 59:
-. [[Tutorials/TutMindNeuromag|Import and process Neuromag raw recordings]]
+. [[Tutorials/TutMindNeuromag|Neuromag raw recordings]]
-Line 30:
+Line 61:
-== Other useful tutorials ==
 1. [[Tutorials/TutInverseExpertMode|More inverse methods]]
 1. [[Tutorials/TutScript|Using Brainstorm without the GUI]]
 1. [[CiteBrainstorm|Cite Brainstorm in your publications]]
+=== Source estimation ===
 1. [[Tutorials/TutBem|BEM head model]]
 1. [[Tutorials/TutVolSource|Volume source estimation]]
 1. [[Tutorials/TutProject|Project sources on default anatomy]]
 1. [[Tutorials/TutXfit|Import and visualize dipoles from Neuromag Xfit]]
 1. [[Tutorials/TutClusters|Clusters of sensors]]

=== Other useful how-to's ===
 1. [[Tutorials/TutScript|How to use Brainstorm without the GUI]]
 1. [[CiteBrainstorm|How to cite Brainstorm in your publications]]
 1. [[Tutorials/TutCompile|How to compile Brainstorm]]
 1. [[Tutorials/TutUserProcess|How to write your own processes]]
 1. [[Tutorials/KnownBugs|Known bugs]]

Software

Users

Development

Tutorials

How to use those tutorials

Getting started with Brainstorm

Advanced tutorials

Anatomy and registration

Recordings

Source estimation

Other useful how-to's