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Differences between revisions 76 and 86 (spanning 10 versions)
⇤ ← Revision 76 as of 2011-05-10 04:25:17 →
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← Revision 86 as of 2011-05-14 18:43:30 → ⇥
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 * [[Tutorials/BstFolders|0. Introduction to Brainstorm structure]]  * [[Tutorials/BstFolders|0. Brainstorm architecture]]
  1. [[/Tutorials/BstFolders#Brainstorm_folders|Brainstorm folders]]
  1. [[/Tutorials/BstFolders#Brainstorm_database_.28concept.29|Brainstorm database (concept)]]
  1. [[/Tutorials/BstFolders#Brainstorm_database_.28files.29|Brainstorm database (files)]]
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 * [[Tutorials/TutScouts|8. Scouts: cortical regions of interest]]  * [[Tutorials/TutScouts|8. Scouts: Cortical regions of interest]]
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== Anatomy and registration ==
 1. [[CoordinateSystems|Brainstorm coordinates systems]]
 1. [[Tutorials/SegBrainVisa|Extract head and cortex surface with BrainVISA]]
== Advanced tutorials ==
=== Anatomy and registration ===
 1. [[CoordinateSystems|Brainstorm coordinate systems]]
 1. [[Tutorials/SegBrainVisa|MRI segmentation with BrainVISA]]
 1. [[Tutorials/SegBrainVisa|MRI segmentation]][[Tutorials/SegBrainVisa|with BrainSuite]]
 1. [[Tutorials/SegBrainVisa|MRI segmentation]][[Tutorials/SegBrainVisa|with FreeSurfer]]
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== Recordings == === Recordings ===
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 1. [[Tutorials/TutMindNeuromag|Import and process Neuromag raw recordings]]  1. [[Tutorials/TutMindNeuromag|Neuromag raw recordings]]
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== Source estimation == === Source estimation ===
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 1. [[Tutorials/TutInverseExpertMode|More inverse methods]]
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 1. [[Tutorials/TutClusters|Clusters of sensors]]
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== Other useful tutorials ==
 1. [[Tutorials/TutScript|Using Brainstorm without the GUI]]
 1. [[CiteBrainstorm|Cite Brainstorm in your publications]]
 1. [[Tutorials/TutUserProcess|Writing your own processes]]
=== Other useful how-to's ===
 1. [[Tutorials/TutScript|How to use Brainstorm without the GUI]]
 1. [[CiteBrainstorm|How to cite Brainstorm in your publications]]
 1. [[Tutorials/TutCompile|How to compile Brainstorm]]
 1. [[Tutorials/TutUserProcess|How to write your own processes]]

Tutorials

How to use those tutorials

  1. Go through all the tutorials in the section Getting started with Brainstorm. In just a few hours, they will introduce you to most of the main features of the application.

  2. Then read more specific tutorials, closer to your personal interests.
  3. If you want a printed version of a page, click on the "print" link on the top right of the page.

Getting started with Brainstorm

  • ?0. Brainstorm architecture

    1. ?Brainstorm folders

    2. ?Brainstorm database (concept)

    3. ?Brainstorm database (files)

  • ?1. First steps

  • ?2. Importing individual anatomy

  • ?3. Importing recordings

  • ?4. Exploring the recordings

  • ?5. Computing a head model

  • ?6. Computing a noise covariance matrix

  • ?7. Source estimation

  • ?8. Scouts: Cortical regions of interest

  • ?9. Processes: Graphical batching interface

  • ?10. Statistics

  • ?11. Time-frequency

Advanced tutorials

Anatomy and registration

  1. Brainstorm coordinate systems

  2. MRI segmentation with BrainVISA

  3. MRI segmentationwith BrainSuite

  4. MRI segmentationwith FreeSurfer

  5. ?Refine registration using head points

  6. Warping default anatomy

Recordings

  1. ?Review raw recordings and edit markers

  2. Neuromag raw recordings

Source estimation

  1. BEM head model

  2. Volume source estimation

  3. ?Project sources on default anatomy

  4. ?Import and visualize dipoles from Neuromag Xfit

  5. Clusters of sensors

Other useful how-to's

  1. ?How to use Brainstorm without the GUI

  2. How to cite Brainstorm in your publications

  3. ?How to compile Brainstorm

  4. How to write your own processes

  5. Known bugs

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