Tutorials

How to use those tutorials

1. Go through all the tutorials in the section Getting started with Brainstorm. In just a few hours, they will introduce you to most of the main features of the application.

2. Then read more specific tutorials, closer to your personal interests.
3. If you want a printed version of a page, click on the "print" link on the top right of the page.

Getting started with Brainstorm

• ?0. Brainstorm architecture

  • Brainstorm folders

  • Brainstorm database (concept)

  • Brainstorm database (files)

• ?1. First steps

  1. Starting Brainstorm for the first time
  2. Main interface window
  3. Create first protocol
  4. Fiducials selection (MRI Viewer)
  5. Protocol exploration
  6. MRI visualization
  7. Surfaces visualization
  8. Coordinates tab

• ?2. Importing individual anatomy

  1. Dataset description
  2. Create protocol
  3. Import MRI
  4. Import surfaces
  5. Downsample and merge surfaces
  6. Check registration with MRI
  7. Fix registration with MRI
  8. What happened on the hard drive

• ?3. Importing recordings

• ?4. Exploring the recordings

• ?5. Computing a head model

• ?6. Computing a noise covariance matrix

• ?7. Source estimation

• ?8. Scouts: Cortical regions of interest

• ?9. Processes: Graphical batching interface

• ?10. Statistics

• ?11. Time-frequency

Advanced tutorials

Anatomy and registration

1. Brainstorm coordinate systems

2. MRI segmentation with BrainVISA

3. MRI segmentationwith BrainSuite

4. MRI segmentationwith FreeSurfer

5. ?Refine registration using head points

6. Warping default anatomy

Recordings

1. ?Review raw recordings and edit markers

2. Neuromag raw recordings

Source estimation

1. BEM head model

2. Volume source estimation

3. ?Project sources on default anatomy

4. ?Import and visualize dipoles from Neuromag Xfit

5. Clusters of sensors

Other useful how-to's

1. ?How to use Brainstorm without the GUI

2. How to cite Brainstorm in your publications

3. ?How to compile Brainstorm

4. How to write your own processes

5. Known bugs