|
Size: 7809
Comment:
|
Size: 7862
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 7: | Line 7: |
| '''Starting a new study''' | <<HTML(<TABLE class="tuto-table"><TR><TD>)>> |
| Line 9: | Line 9: |
| ==== Starting a new study ==== | |
| Line 15: | Line 16: |
| '''Reviewing and pre-processing''' <<HTML( )>>4. [[Tutorials/ChannelFile|Channel file and coregistration MEG-MRI]] |
==== Reviewing ==== <<HTML( )>>4. [[Tutorials/ChannelFile|Channel file & MRI coregistration]] |
| Line 21: | Line 21: |
| <<HTML( )>>6. [[Tutorials/MontageEditor|Montage editor]] [Under construction] | <<HTML( )>>6. [[Tutorials/MultipleWindows|Multiple windows]] |
| Line 23: | Line 23: |
| <<HTML( )>>7. [[Tutorials/Desktop|Multiple windows]] [Under construction] | <<HTML( )>>7. [[Tutorials/EventMarkers|Event markers]] |
| Line 25: | Line 25: |
| <<HTML( )>>8. [[Tutorials/EventMarkers|Event markers]] [Under construction] | ==== Pre-processing ==== <<HTML( )>>8. [[Tutorials/StimDelays|Stimulation delays]] [Under construction] |
| Line 27: | Line 28: |
| <<HTML( )>>9. [[Tutorials/StimDelays|Stimulation delays]] [Under construction] | <<HTML( )>>9. [[Tutorials/ArtifactsFilter|Frequency filters]] [Under construction] |
| Line 29: | Line 30: |
| <<HTML( )>>10. [[Tutorials/ArtifactsFilter|Frequency filters]] [Under construction] | <<HTML( )>>10. [[Tutorials/BadChannels|Bad channels]] [Under construction] |
| Line 31: | Line 32: |
| <<HTML( )>>11. [[Tutorials/BadChannels|Bad channels]] [Under construction] | <<HTML( )>>11. [[Tutorials/ArtifactsDetect|Artifact detection]] [Under construction] |
| Line 33: | Line 34: |
| <<HTML( )>>12. [[Tutorials/ArtifactsDetect|Artifact detection]] [Under construction] | <<HTML( )>>12. [[Tutorials/ArtifactsSsp|Artifact cleaning with SSP]] [Under construction] |
| Line 35: | Line 36: |
| <<HTML( )>>13. [[Tutorials/ArtifactsSsp|Artifact cleaning with SSP]] [Under construction] | <<HTML( )>>13. [[Tutorials/BadSegments|Additional bad segments]] [Under construction] |
| Line 37: | Line 38: |
| <<HTML( )>>14. [[Tutorials/BadSegments|Additional bad segments]] [Under construction] | <<HTML(</TD><TD>)>> |
| Line 39: | Line 40: |
| '''Epoching and averaging''' [Under construction] | ==== Epoching and averaging [Under construction] ==== <<HTML( )>>14. [[Tutorials/Epoching|Import epochs]] |
| Line 41: | Line 43: |
| <<HTML( )>>15. [[Tutorials/Epoching|Import epochs]] | <<HTML( )>>15. [[Tutorials/Averaging|Average response]] |
| Line 43: | Line 45: |
| <<HTML( )>>16. [[Tutorials/Averaging|Average response]] | <<HTML( )>>16. [[Tutorials/ExploreRecordings|Exploring the average response]] |
| Line 45: | Line 47: |
| <<HTML( )>>17. [[Tutorials/ExploreRecordings|Exploring the average response]] | <<HTML( )>>17. 2D/3D topography |
| Line 47: | Line 49: |
| <<HTML( )>>18. 2D/3D topography | <<HTML( )>>18. [[Tutorials/Colormaps|Colormaps]] |
| Line 49: | Line 51: |
| <<HTML( )>>19. [[Tutorials/Colormaps|Colormaps]] | ==== Source modeling [Under construction] ==== <<HTML( )>>19. [[Tutorials/HeadModel|Head model]] |
| Line 51: | Line 54: |
| '''Source modeling''' [Under construction] | <<HTML( )>>20. [[Tutorials/NoiseCovariance|Noise covariance]] |
| Line 53: | Line 56: |
| <<HTML( )>>20. [[Tutorials/HeadModel|Head model]] | <<HTML( )>>21. [[Tutorials/SourceEstimation|Source estimation]] |
| Line 55: | Line 58: |
| <<HTML( )>>21. [[Tutorials/NoiseCovariance|Noise covariance]] | <<HTML( )>>22. [[Tutorials/Scouts|Scouts]] |
| Line 57: | Line 60: |
| <<HTML( )>>22. [[Tutorials/SourceEstimation|Source estimation]] | ==== Advanced topics [Under construction] ==== <<HTML( )>>23. [[Tutorials/TimeFrequency|Time-frequency]] |
| Line 59: | Line 63: |
| <<HTML( )>>23. [[Tutorials/Scouts|Scouts]] | <<HTML( )>>24. [[Tutorials/Statistics|Statistics]] |
| Line 61: | Line 65: |
| '''Advanced topics''' [Under construction] | <<HTML( )>>25. [[Tutorials/Connectivity|Connectivity]] |
| Line 63: | Line 67: |
| <<HTML( )>>24. [[Tutorials/TimeFrequency|Time-frequency]] | <<HTML( )>>26. Phase-amplitude coupling |
| Line 65: | Line 69: |
| <<HTML( )>>25. [[Tutorials/Statistics|Statistics]] | <<HTML( )>>27. [[Tutorials/Scripting|Advanced scripting]] |
| Line 67: | Line 71: |
| <<HTML( )>>26. [[Tutorials/Connectivity|Connectivity]] | <<HTML( )>>28. Complete tutorial script |
| Line 69: | Line 73: |
| <<HTML( )>>27. Phase-amplitude coupling | <<HTML( )>>29. Summary |
| Line 71: | Line 75: |
| <<HTML( )>>28. [[Tutorials/Scripting|Advanced scripting]] <<HTML( )>>29. Complete tutorial script <<HTML( )>>30. Summary |
<<HTML(</TD></TR></TABLE>)>> |
| Line 86: | Line 86: |
| === Interface === 1. [[Tutorials/MontageEditor|Montage editor]] [Under construction] |
|
| Line 100: | Line 103: |
| === Graphical scripting === | === Scripting === |
Tutorials
These tutorial pages suppose you are comfortable with the basic concepts of MEG/EEG analysis and source imaging. If you're not, we encourage you to read some background literature.
Get started
The easiest way to get started with Brainstorm is to read and follow carefully these introduction tutorials. In just a few hours, you will be introduced to the essential features of the application.
|
Starting a new study
Reviewing4. Channel file & MRI coregistration
Pre-processing8. Stimulation delays [Under construction] 9. Frequency filters [Under construction] 10. Bad channels [Under construction] 11. Artifact detection [Under construction] 12. Artifact cleaning with SSP [Under construction] 13. Additional bad segments [Under construction] |
Epoching and averaging [Under construction]14. Import epochs 15. Average response 16. Exploring the average response 17. 2D/3D topography 18. Colormaps
Source modeling [Under construction]19. Head model 20. Noise covariance 22. Scouts
Advanced topics [Under construction]23. Time-frequency 24. Statistics 25. Connectivity 26. Phase-amplitude coupling 28. Complete tutorial script 29. Summary |
Complete analysis of other datasets
MEG median nerve (CTF) [Under construction]
MEG median nerve (Elekta-Neuromag) [Under construction]
Advanced tutorials
Interface
Montage editor [Under construction]
Anatomy and registration
MRI segmentation: FreeSurfer, BrainVISA, BrainSuite, CIVET
Using the anatomy templates [Under construction]
- Group studies: Averaging
Scripting
Source modeling
Beamforming methods [Under construction]
Maximum Entropy on the Mean (MEM) [Under construction]
Functional connectivity
Statistics
Other useful how-to's
?MEG analysis guidelines for McGill
Examples
This video illustrates how Brainstorm can be used for studying amygdala activity:
How to Detect Amygdala Activity with Magnetoencephalography using Source Imaging
Authors: Balderston NL, Schultz DH, Baillet S, Helmstetter FJ
Background readings
These tutorial pages suppose you are comfortable with the basic concepts of MEG and EEG source imaging. If you're not, we engage you to read some background information, which will quickly help you getting up to speed with this field:
A non-technical overview of MEG and EEG, with an emphasis on source modeling:
Canada MEG ConsortiumSlides from a selection of educational courses:
megcommunity.org- Reference books:
MEG: An Introduction to Methods
Editors: P Hansen, M Kringelbach, R Salmelin, Oxford University Press, 2010, 448 pagesThe Oxford Handbook of Social Neuroscience
Editors: J Decety, JT Cacioppo, Oxford University Press, 2011, 1128 pages
A draft version of the MEG chapter by Sylvain Baillet can be found here.
Good practice for conducting and reporting MEG research, Gross et al, Neuroimage, 2013
You can also ask us to come and organize a training session at your institution, or visit us to obtain training (McGill's Montreal Neurological Institute).
Now you are well equipped to go through the software tutorial, Enjoy!