|
Size: 9643
Comment:
|
Size: 9712
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 63: | Line 63: |
| <<HTML( )>>22. [[Tutorials/SourceEstimation|Source estimation]] [Under construction] | <<HTML( )>>22. [[Tutorials/SourceEstimation|Source estimation]] <<HTML(<FONT color="#DDDDDD">)>>[26] <<HTML(</FONT>)>> |
| Line 65: | Line 65: |
| <<HTML( )>>23. [[Tutorials/Scouts|Scouts]] [Under construction] | <<HTML( )>>23. [[Tutorials/Scouts|Scouts]] <<HTML(<FONT color="#DDDDDD">)>>[17] <<HTML(</FONT>)>> |
| Line 69: | Line 69: |
| <<HTML( )>>24. [[Tutorials/TimeFrequency|Time-frequency]] [Under construction] | <<HTML( )>>24. [[Tutorials/TimeFrequency|Time-frequency]]<<HTML(<FONT color="#DDDDDD">)>>[22] <<HTML(</FONT>)>> |
| Line 75: | Line 75: |
| <<HTML( )>>27. Phase-amplitude coupling [Under construction] |
|
| Line 79: | Line 77: |
| <<HTML( )>>28. [[Tutorials/Scripting|Complete tutorial script]] [Under construction] | <<HTML( )>>27. [[Tutorials/Scripting|Complete tutorial script]] [Under construction] |
| Line 81: | Line 79: |
| <<HTML( )>>29. [[Tutorials/AllIntroduction|All the tutorials on the same page]] | <<HTML( )>>28. [[Tutorials/AllIntroduction|All the tutorials on the same page]] |
| Line 134: | Line 132: |
| 1. [[Tutorials/Decoding|Decoding conditions (MVPA)]] |
Tutorials
These tutorial pages suppose you are comfortable with the basic concepts of MEG/EEG analysis and source imaging. If you're not, we encourage you to read some background literature.
To get a quick overview of the software interface, you can watch this introduction video.
Get started
The easiest way to get started with Brainstorm is to read and follow carefully these introduction tutorials. In just a few hours, you will be introduced to the essential features of the application. The number between brackets represents the number of printed pages for each tutorial.
| Starting a new study 1. Create a new protocol [9] 2. Import the subject anatomy [8] 3. Explore the anatomy [10] Reviewing 4. Channel file / MRI registration [11] 5. Continuous recordings [9] 6. Multiple windows [5] 7. Event markers [10] Pre-processing 8. Stimulation delays [10] 9. Select files / Run processes [10] 10. Power spectrum / Frequency filters [11] 11. Bad channels [6] 12. Artifact detection [7] 13. Artifact cleaning with SSP [16] 14. Additional bad segments [7] Epoching and averaging 15. Import epochs [7] 16. Average response [7] 17. Visual exploration [10] 18. Colormaps [6] 19. Clusters of sensors [4] | Source modeling 20. Head model [8] 21. Noise/data covariance [8] 22. Source estimation [26] 23. Scouts [17] Advanced signal processing 24. Time-frequency[22] 25. Statistics [Under construction] 26. Connectivity [Under construction] Scripting 27. Complete tutorial script [Under construction] |
Other analysis scenarios
MEG median nerve (CTF) [Under construction]
MEG median nerve (Elekta-Neuromag) [Under construction]
MEG visual single subject (Elekta-Neuromag) [Under construction]
MEG visual group study (Elekta-Neuromag) [Under construction]
Advanced tutorials
Recordings
Montage editor [Under construction]
- ICA decomposition [Under construction]
Anatomy and registration
MRI segmentation: FreeSurfer, BrainSuite, BrainVISA, CIVET
Using the anatomy templates [Under construction]
- Group analysis: Averaging [Under construction]
Source modeling
Beamforming methods [Under construction]
Maximum Entropy on the Mean (MEM) [Under construction]
Advanced processing
Other useful how-to's
Tutorials from other authors
This video illustrates how Brainstorm can be used for studying amygdala activity:
How to Detect Amygdala Activity with Magnetoencephalography using Source Imaging
Authors: Balderston NL, Schultz DH, Baillet S, Helmstetter FJA tutorial in Japanese (click on the menu "Brainstorm")
?MEG analysis guidelines for McGill
Background readings
These tutorial pages suppose you are comfortable with the basic concepts of MEG and EEG source imaging. If you're not, we engage you to read some background information, which will quickly help you getting up to speed with this field:
A non-technical overview of MEG and EEG, with an emphasis on source modeling:
Canada MEG ConsortiumSlides from a selection of educational courses:
megcommunity.org- Reference books:
MEG: An Introduction to Methods
Editors: P Hansen, M Kringelbach, R Salmelin, Oxford University Press, 2010, 448 pagesThe Oxford Handbook of Social Neuroscience
Editors: J Decety, JT Cacioppo, Oxford University Press, 2011, 1128 pages
A draft version of the MEG chapter by Sylvain Baillet can be found here.
Good practice for conducting and reporting MEG research, Gross et al, Neuroimage, 2013
You can also ask us to come and organize a training session at your institution, or visit us to obtain training (McGill's Montreal Neurological Institute).
Now you are well equipped to go through the software tutorial, Enjoy!