|
Size: 9679
Comment:
|
Size: 10290
Comment:
|
| Deletions are marked like this. | Additions are marked like this. |
| Line 2: | Line 2: |
| These tutorial pages suppose you are comfortable with the basic concepts of MEG/EEG analysis and source imaging. If you're not, we encourage you to read some [[http://neuroimage.usc.edu/brainstorm/TutorialsNew#Background_readings|background literature]].<<BR>>To get a quick overview of the software interface, you can watch this [[Screenshots|introduction video]]. | These tutorial pages suppose you are comfortable with the basic concepts of MEG/EEG analysis and source imaging. If you're not, we encourage you to read some [[http://neuroimage.usc.edu/brainstorm/Tutorials#Background_readings|background literature]].<<BR>>To get a quick overview of the software interface, you can watch this [[Screenshots|introduction video]].<<BR>><<HTML(<FONT color="#C0C0C0" >)>>If you are looking for the old tutorials, they are still available [[TutorialsOld|here]]. <<HTML(</FONT>)>> |
| Line 5: | Line 5: |
| The easiest way to get started with Brainstorm is to read and follow carefully these introduction tutorials. In just a few hours, you will be introduced to the essential features of the application. The number between brackets represents the number of printed pages for each tutorial. | The easiest way to get started with Brainstorm is to read and follow carefully these introduction tutorials. The number between brackets represents the number of printed pages for each tutorial. |
| Line 43: | Line 43: |
| <<HTML(</TD><TD>)>> |
|
| Line 55: | Line 57: |
| <<HTML(</TD><TD>)>> |
|
| Line 63: | Line 63: |
| <<HTML( )>>22. [[Tutorials/SourceEstimation|Source estimation]] <<HTML(<FONT color="#DDDDDD">)>>[26] <<HTML(</FONT>)>> | <<HTML( )>>22. [[Tutorials/SourceEstimation|Source estimation]] [Under construction] |
| Line 67: | Line 67: |
| '''Advanced signal processing''' | '''Advanced processing''' |
| Line 69: | Line 69: |
| <<HTML( )>>24. [[Tutorials/TimeFrequency|Time-frequency]] [Under construction] | <<HTML( )>>24. [[Tutorials/TimeFrequency|Time-frequency]] <<HTML(<FONT color="#DDDDDD">)>>[22] <<HTML(</FONT>)>> |
| Line 71: | Line 71: |
| <<HTML( )>>25. [[Tutorials/Statistics|Statistics]] [Under construction] | <<HTML( )>>25. [[Tutorials/Difference|Difference]] <<HTML(<FONT color="#DDDDDD">)>>[9] <<HTML(</FONT>)>> |
| Line 73: | Line 73: |
| <<HTML( )>>26. [[Tutorials/Connectivity|Connectivity]] [Under construction] | <<HTML( )>>26. [[Tutorials/Statistics|Statistics]] <<HTML(<FONT color="#DDDDDD">)>>[27] <<HTML(</FONT>)>> [Under construction] |
| Line 75: | Line 75: |
| '''Scripting''' | <<HTML( )>>27. [[Tutorials/Connectivity|Connectivity]] [Under construction] |
| Line 77: | Line 77: |
| <<HTML( )>>27. [[Tutorials/Scripting|Complete tutorial script]] [Under construction] <<HTML( )>>28. [[Tutorials/AllIntroduction|All the tutorials on the same page]] |
<<HTML( )>>28. [[Tutorials/Scripting|Scripting]] [Under construction] |
| Line 92: | Line 90: |
| 1. MEG steady-state visual (CTF) | |
| Line 96: | Line 95: |
| 1. ICA decomposition [Under construction] | 1. [[Tutorials/ICA|ICA decomposition]] [Under construction] |
| Line 102: | Line 101: |
| 1. [[Tutorials/EyetrackSynchro|Synchronization with eyetracker]] |
|
| Line 105: | Line 106: |
| 1. [[Tutorials/DefaultAnatomy|Using the anatomy templates]] [Under construction] | 1. [[Tutorials/DefaultAnatomy|Using the anatomy templates]] |
| Line 110: | Line 111: |
1. Group analysis: Averaging [Under construction] |
|
| Line 121: | Line 120: |
| 1. [[http://neuroimage.usc.edu/brainstorm/Tutorials/DeepAtlas|Deep cerebral structures]] [Under construction] |
|
| Line 122: | Line 123: |
1. [[Tutorials/DipoleFitting|Dipole fitting with FieldTrip]] |
|
| Line 125: | Line 128: |
| 1. [[Tutorials/TutBEst|Maximum Entropy on the Mean (MEM)]] [Under construction] | 1. [[Tutorials/TutBEst|Maximum Entropy on the Mean (MEM)]] 1. [[Tutorials/TutBEst|Maximum Entropy on the Mean (MEM) - Epilepsy]] |
| Line 133: | Line 138: |
| 1. [[Tutorials/MicrostatesCena|Microstate segmentation with CENA]] | |
| Line 136: | Line 142: |
| 1. [[Tutorials/IPythonNotebook|Brainstorm on IPython Notebook]] [Under construction] | |
| Line 139: | Line 146: |
1. [[Tutorials/AllIntroduction|All the introduction tutorials on the same page]] |
Tutorials
These tutorial pages suppose you are comfortable with the basic concepts of MEG/EEG analysis and source imaging. If you're not, we encourage you to read some background literature.
To get a quick overview of the software interface, you can watch this introduction video.
If you are looking for the old tutorials, they are still available ?here.
Get started
The easiest way to get started with Brainstorm is to read and follow carefully these introduction tutorials. The number between brackets represents the number of printed pages for each tutorial.
| Starting a new study 1. Create a new protocol [9] 2. Import the subject anatomy [8] 3. Explore the anatomy [10] Reviewing 4. Channel file / MRI registration [11] 5. Continuous recordings [9] 6. Multiple windows [5] 7. Event markers [10] Pre-processing 8. Stimulation delays [10] 9. Select files / Run processes [10] 10. Power spectrum / Frequency filters [11] 11. Bad channels [6] 12. Artifact detection [7] 13. Artifact cleaning with SSP [16] 14. Additional bad segments [7] | Epoching and averaging 15. Import epochs [7] 16. Average response [7] 17. Visual exploration [10] 18. Colormaps [6] 19. Clusters of sensors [4] Source modeling 20. Head model [8] 21. Noise/data covariance [8] 22. Source estimation [Under construction] 23. Scouts [17] Advanced processing 24. Time-frequency [22] 25. Difference [9] 26. Statistics [27] [Under construction] 27. Connectivity [Under construction] 28. Scripting [Under construction] |
Other analysis scenarios
MEG median nerve (CTF) [Under construction]
MEG median nerve (Elekta-Neuromag) [Under construction]
MEG visual single subject (Elekta-Neuromag) [Under construction]
MEG visual group study (Elekta-Neuromag) [Under construction]
- MEG steady-state visual (CTF)
Advanced tutorials
Recordings
Montage editor [Under construction]
?ICA decomposition [Under construction]
Anatomy and registration
MRI segmentation: FreeSurfer, BrainSuite, BrainVISA, CIVET
Source modeling
Deep cerebral structures [Under construction]
Beamforming methods [Under construction]
Advanced processing
Other useful how-to's
?Brainstorm on IPython Notebook [Under construction]
Tutorials from other authors
This video illustrates how Brainstorm can be used for studying amygdala activity:
How to Detect Amygdala Activity with Magnetoencephalography using Source Imaging
Authors: Balderston NL, Schultz DH, Baillet S, Helmstetter FJA tutorial in Japanese (click on the menu "Brainstorm")
?MEG analysis guidelines for McGill
Background readings
These tutorial pages suppose you are comfortable with the basic concepts of MEG and EEG source imaging. If you're not, we engage you to read some background information, which will quickly help you getting up to speed with this field:
A non-technical overview of MEG and EEG, with an emphasis on source modeling:
Canada MEG ConsortiumSlides from a selection of educational courses:
megcommunity.org- Reference books:
MEG: An Introduction to Methods
Editors: P Hansen, M Kringelbach, R Salmelin, Oxford University Press, 2010, 448 pagesThe Oxford Handbook of Social Neuroscience
Editors: J Decety, JT Cacioppo, Oxford University Press, 2011, 1128 pages
A draft version of the MEG chapter by Sylvain Baillet can be found here.
Good practice for conducting and reporting MEG research, Gross et al, Neuroimage, 2013
You can also ask us to come and organize a training session at your institution, or visit us to obtain training (McGill's Montreal Neurological Institute).
Now you are well equipped to go through the software tutorial, Enjoy!